RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 KLK13Q9UKR3 277 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 ANKRD6Q9Y2G4 727 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 HS3ST4Q9Y661 456 aa10.54□□□□□ -0.72
LDLR-214ENST00000560628 MAP1BP46821 2468 aaKnown RBP10.53□□□□□ -0.72
LDLR-214ENST00000560628 KNL1Q8NG31 2342 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 A0A1B0GVM2 712 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 TCAF2A6NFQ2 919 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 PLK4O00444 970 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 DAB1O75553 588 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 ADCY5O95622 1261 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 CER1O95813 267 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 IL1BP01584 269 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 IGHV4-34P06331 123 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 CYP11B1P15538 503 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 RDXP35241 583 aaKnown RBP10.53□□□□□ -0.72
LDLR-214ENST00000560628 PLK1P53350 603 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 SLC12A1Q13621 1099 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 HNRNPDQ14103 355 aaKnown RBP10.53□□□□□ -0.72
LDLR-214ENST00000560628 ARID5BQ14865 1188 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 TEAD4Q15561 434 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 TCP11X2Q5H9J9 407 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 PRAMEF14Q5SWL7 426 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 CXorf57Q6NSI4 855 aaKnown RBP10.53□□□□□ -0.72
LDLR-214ENST00000560628 IL27RAQ6UWB1 636 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 LRSAM1Q6UWE0 723 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.53□□□□□ -0.72
LDLR-214ENST00000560628 USP30Q70CQ3 517 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 ERICH1Q86X53 443 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 AADATQ8N5Z0 425 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 CPA5Q8WXQ8 436 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 C18orf8Q96DM3 657 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 ALG14Q96F25 216 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 NPY6RQ99463 290 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 ORAI3Q9BRQ5 295 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 FEM1AQ9BSK4 669 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 TKTL2Q9H0I9 626 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 VPS16Q9H269 839 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 WDCPQ9H6R7 721 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 EBF2Q9HAK2 575 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 ANLNQ9NQW6 1124 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 TMPRSS4Q9NRS4 437 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 PIGVQ9NUD9 493 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 LMBRD1Q9NUN5 540 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.53□□□□□ -0.723e-7■■■■■ 52.1
LDLR-214ENST00000560628 SCML1Q9UN30 329 aa10.53□□□□□ -0.72
LDLR-214ENST00000560628 EPG5Q9HCE0 2579 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 CHD8Q9HCK8 2581 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 GOLGA8CPA6NN73 597 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 GOLGA8SH3BPF8 625 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 BNIP3LO60238 219 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 CBFA2T3O75081 653 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 CNTN5O94779 1100 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 MMEP08473 750 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 FTH1P19P0C7X4 201 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 UCHL3P15374 230 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 ZNF18P17022 549 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 GOT1P17174 413 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 C5AR1P21730 350 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 CXCR3P49682 368 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 KLK7P49862 253 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 SULT1E1P49888 294 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 METAP1P53582 386 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 OXCT1P55809 520 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 DEUP1Q05D60 604 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 SULT2A1Q06520 285 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 SFSWAPQ12872 951 aaKnown RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 ZNF423Q2M1K9 1284 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 POM121L1PQ3SYA9 428 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 FAM102AQ5T9C2 384 aaPredicted RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 TTC39BQ5VTQ0 682 aaPredicted RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 OTUD1Q5VV17 481 aaPredicted RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 ADAT2Q7Z6V5 191 aaKnown RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 PHLDB2Q86SQ0 1253 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 NOP9Q86U38 636 aaKnown RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 SLCO6A1Q86UG4 719 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 ZDHHC17Q8IUH5 632 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 ZNF397Q8NF99 534 aaPredicted RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 OR2T34Q8NGX1 318 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 OR14C36Q8NHC7 312 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 RHBDD1Q8TEB9 315 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 FRS2Q8WU20 508 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 GATA6Q92908 595 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 SLC6A18Q96N87 628 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 PPP1R9BQ96SB3 815 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 TBCBQ99426 244 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 NAA15Q9BXJ9 866 aaKnown RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 TMEM121BQ9BXQ6 578 aaPredicted RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 OSGEPQ9NPF4 335 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 VPS28Q9UK41 221 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 PCOLCE2Q9UKZ9 415 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 ZMIZ1Q9ULJ6 1067 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 BTBD3Q9Y2F9 522 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 OR51B4Q9Y5P0 310 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 ITIH6Q6UXX5 1313 aa10.52□□□□□ -0.73
LDLR-214ENST00000560628 MUC22E2RYF6 1773 aaPredicted RBP10.52□□□□□ -0.73
LDLR-214ENST00000560628 A0A1W2PPC4 97 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 LRRC72A6NJI9 287 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 H0Y8X5 98 aa10.51□□□□□ -0.73
LDLR-214ENST00000560628 I6L893 689 aaPredicted RBP10.51□□□□□ -0.73
LDLR-214ENST00000560628 WNT9AO14904 365 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms