RNA–Protein interactions for RNA: ENST00000560207.1

RABGGTA-215, Transcript of Rab geranylgeranyltransferase subunit alpha, humanhuman

TSL 3

Gene RABGGTA, Length 678 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RABGGTA-215ENST00000560207 KIR2DL1P43626 348 aaPredicted RBP12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 CXCL12P48061 93 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 CLCN6P51797 869 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 DGKEP52429 567 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 CCZ1BP86790 482 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 CCZ1P86791 482 aaPredicted RBP12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 SFSWAPQ12872 951 aaKnown RBP12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 PPP6R3Q5H9R7 873 aaPredicted RBP12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 PITRM1Q5JRX3 1037 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 ZFYVE27Q5T4F4 411 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 IER5LQ5T953 404 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 MBLAC2Q68D91 279 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 RFX8Q6ZV50 586 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 C14orf80Q86SX3 495 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 DCAF4L2Q8NA75 395 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 DTWD2Q8NBA8 298 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 ACRBPQ8NEB7 543 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 TPCN2Q8NHX9 752 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 USP33Q8TEY7 942 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 ALS2CR12Q96Q35 445 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 FEM1AQ9BSK4 669 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 CIPCQ9C0C6 399 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 MUC3BQ9H195 1237 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 HAUS2Q9NVX0 235 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 THAP10Q9P2Z0 257 aaPredicted RBP12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 SLC25A13Q9UJS0 675 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 VPS28Q9UK41 221 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 MMP17Q9ULZ9 603 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 REXO2Q9Y3B8 237 aaKnown RBP12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 CKAP5Q14008 2032 aa12.38□□□□□ -0.43
RABGGTA-215ENST00000560207 ZNF318Q5VUA4 2279 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 LAMTOR5O43504 91 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 BUB1BO60566 1050 aaPredicted RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 RAMP2O60895 175 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 ZNF189O75820 626 aaPredicted RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 ALDH1A2O94788 518 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 ZFXP17010 805 aaPredicted RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 COMTP21964 271 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 SGSHP51688 502 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 CDH6P55285 790 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 COPS2P61201 443 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 ECT2LQ008S8 904 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 GNA12Q03113 381 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 LMAN2Q12907 356 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 ENPP2Q13822 863 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 STARD3Q14849 445 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 POLD3Q15054 466 aaPredicted RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 GEN1Q17RS7 908 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 ZNF528Q3MIS6 628 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 ALFQ53S48 1182 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 CXorf57Q6NSI4 855 aaKnown RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 TMCO3Q6UWJ1 677 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 CYP4V2Q6ZWL3 525 aaPredicted RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 BZW1Q7L1Q6 419 aaKnown RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 ADIPOR2Q86V24 386 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 NLRP14Q86W24 1093 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 C1orf210Q8IVY1 113 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 CHPFQ8IZ52 775 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 UBL4BQ8N7F7 174 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 HSPH1Q92598 858 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 RBM41Q96IZ5 413 aaKnown RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 BTBD6Q96KE9 485 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 LMLNQ96KR4 655 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 CCDC114Q96M63 670 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 PEBP4Q96S96 227 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 LRFN3Q9BTN0 628 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 LACRTQ9GZZ8 138 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 FBRSL1Q9HCM7 1045 aaKnown RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 POLMQ9NP87 494 aaPredicted RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 C11orf16Q9NQ32 467 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 MPP6Q9NZW5 540 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 AMFRQ9UKV5 643 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 MTF2Q9Y483 593 aaPredicted RBP12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 RAD54BQ9Y620 910 aa12.37□□□□□ -0.43
RABGGTA-215ENST00000560207 TARSL2A2RTX5 802 aaKnown RBP12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 ARHGAP42A6NI28 874 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 TMEM110-MUSTN1A8MSY1 372 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 PRRT4C9JH25 899 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 CNTN5O94779 1100 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 ZRANB2O95218 330 aaKnown RBP eCLIP12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 PDGFBP01127 241 aaPredicted RBP12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 DCNP07585 359 aaKnown RBP12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 IL1R2P27930 398 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 CD70P32970 193 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 CSKP41240 450 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 TFDP2Q14188 446 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 RAB6CQ53S08 254 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 KCNT1Q5JUK3 1230 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 PEX26Q7Z412 305 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 KATNAL2Q8IYT4 538 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 RCOR2Q8IZ40 523 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 TRIM58Q8NG06 486 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 RPLP0P6Q8NHW5 317 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 GABRG3Q99928 467 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 DESI2Q9BSY9 194 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 MAK16Q9BXY0 300 aaKnown RBP12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 RAB6CQ9H0N0 254 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 PCDH18Q9HCL0 1135 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 TMPRSS4Q9NRS4 437 aa12.36□□□□□ -0.43
RABGGTA-215ENST00000560207 SPATA6Q9NWH7 488 aaPredicted RBP12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms