RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 MSH2P43246 934 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 CDK16Q00536 496 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 ANKRD20A2Q5SQ80 823 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 FAXCQ5TGI0 409 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 ANKRD20A1Q5TYW2 823 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 GKAP1Q5VSY0 366 aaPredicted RBP18.27■□□□□ 0.52
SNX1-208ENST00000559844 ANKRD20A3Q5VUR7 823 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 ANKRD42Q8N9B4 389 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 PAFAH2Q99487 392 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 BRD8Q9H0E9 1235 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 TRABDQ9H4I3 376 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 IGFLR1Q9H665 355 aa18.27■□□□□ 0.52
SNX1-208ENST00000559844 XAB2Q9HCS7 855 aaKnown RBP18.27■□□□□ 0.52
SNX1-208ENST00000559844 RRP15Q9Y3B9 282 aaKnown RBP18.27■□□□□ 0.52
SNX1-208ENST00000559844 PRPF4O43172 522 aaKnown RBP eCLIP18.26■□□□□ 0.51
SNX1-208ENST00000559844 SOAT2O75908 522 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 EPCAMP16422 314 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 GRIK1P39086 918 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 YWHAGP61981 247 aaKnown RBP eCLIP18.26■□□□□ 0.51
SNX1-208ENST00000559844 AP1B1Q10567 949 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 DEFB123Q8N688 67 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 KREMEN2Q8NCW0 462 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 SLC22A17Q8WUG5 538 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 SSU72Q9NP77 194 aaKnown RBP18.26■□□□□ 0.51
SNX1-208ENST00000559844 ABCC13Q9NSE7 274 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 HCFC2Q9Y5Z7 792 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 GREB1Q4ZG55 1949 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 FAM47DPA6NHR8 397 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 HAPLN1P10915 354 aaPredicted RBP18.26■□□□□ 0.51
SNX1-208ENST00000559844 ERCC2P18074 760 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 TAC4Q86UU9 113 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 CAND1Q86VP6 1230 aaKnown RBP18.26■□□□□ 0.51
SNX1-208ENST00000559844 IGDCC3Q8IVU1 814 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 SCN4BQ8IWT1 228 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 TCEAL8Q8IYN2 117 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 MGARPQ8TDB4 240 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 DQX1Q8TE96 717 aaKnown RBP18.26■□□□□ 0.51
SNX1-208ENST00000559844 LRRN4Q8WUT4 740 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 LGMNQ99538 433 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 CDCA3Q99618 268 aaPredicted RBP18.26■□□□□ 0.51
SNX1-208ENST00000559844 TKTL2Q9H0I9 626 aa18.26■□□□□ 0.51
SNX1-208ENST00000559844 EIF2B3Q9NR50 452 aaKnown RBP18.26■□□□□ 0.51
SNX1-208ENST00000559844 TRDMT1O14717 391 aaKnown RBP18.25■□□□□ 0.51
SNX1-208ENST00000559844 MLNP12872 115 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 POU3F3P20264 500 aaPredicted RBP18.25■□□□□ 0.51
SNX1-208ENST00000559844 GBP2P32456 591 aaPredicted RBP18.25■□□□□ 0.51
SNX1-208ENST00000559844 MAGEA11P43364 429 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 IFNAR2P48551 515 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 SLC5A3P53794 718 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 SYCP2LQ5T4T6 812 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 CACNA2D3Q8IZS8 1091 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 MICALL1Q8N3F8 863 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 CCNYQ8ND76 341 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 CKAP2Q8WWK9 683 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 RNF34Q969K3 372 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 P2RY11Q96G91 374 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 CDX2Q99626 313 aaPredicted RBP18.25■□□□□ 0.51
SNX1-208ENST00000559844 MAN1C1Q9NR34 630 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 HSFX1Q9UBD0 423 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 MAFFQ9ULX9 164 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 IKBKGQ9Y6K9 419 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 FAM169AQ9Y6X4 670 aa18.25■□□□□ 0.51
SNX1-208ENST00000559844 ZNF638Q14966 1978 aaKnown RBP18.25■□□□□ 0.51
SNX1-208ENST00000559844 TCRBV9S1A1TA0A576 114 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 FOXO6A8MYZ6 492 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 RNF103O00237 685 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 IGLV3-25P01717 112 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 MX2P20592 715 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 SERPINB6P35237 376 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 MAGEA3P43357 314 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 TUFMP49411 452 aaKnown RBP18.24■□□□□ 0.51
SNX1-208ENST00000559844 GPR15P49685 360 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 HYAL1Q12794 435 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 QPCTQ16769 361 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 DDR2Q16832 855 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 PARP6Q2NL67 630 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 BTBD8Q5XKL5 378 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 TAX1BP1Q86VP1 789 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 CCDC33Q8N5R6 958 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 MYLIPQ8WY64 445 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 SEC16BQ96JE7 1060 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 OSBPL2Q9H1P3 480 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 ANLNQ9NQW6 1124 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 ZC3H7BQ9UGR2 993 aaKnown RBP18.24■□□□□ 0.51
SNX1-208ENST00000559844 YIPF1Q9Y548 306 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 INSL5Q9Y5Q6 135 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 IQANK1A0A1B0GTG1 560 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 FAM72CH0Y354 149 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 TNFRSF10BO14763 440 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 MTSS1O43312 755 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 AVILO75366 819 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 KIAA0754O94854 1291 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 CPP00450 1065 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 C1RP00736 705 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 C8AP07357 584 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 VIMP08670 466 aaKnown RBP18.24■□□□□ 0.51
SNX1-208ENST00000559844 MTM1Q13496 603 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 EFTUD2Q15029 972 aaKnown RBP eCLIP18.24■□□□□ 0.517e-14■■■■■ 31
SNX1-208ENST00000559844 LRRC14Q15048 493 aa18.24■□□□□ 0.51
SNX1-208ENST00000559844 BRMS1LQ5PSV4 323 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms