RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TJP3O95049 919 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 ASLP04424 464 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 ATP5BP06576 529 aaKnown RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 PABPC1P11940 636 aaKnown RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 POLR2EP19388 210 aaKnown RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 MX2P20592 715 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 AMPD1P23109 780 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 PTPN7P35236 360 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 GGCXP38435 758 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 NNMTP40261 264 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 GALK1P51570 392 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 PLK1P53350 603 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 GEMIN4P57678 1058 aaKnown RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 STARD6P59095 220 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 SLC20A2Q08357 652 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 SIGLEC14Q08ET2 396 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 LRRC32Q14392 662 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 POLD3Q15054 466 aaPredicted RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 EIF4HQ15056 248 aaKnown RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 FBXO43Q4G163 708 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 DGKKQ5KSL6 1271 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 CCDC181Q5TID7 509 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 TPRG1Q6ZUI0 275 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 ANKS1BQ7Z6G8 1248 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 TFAP2DQ7Z6R9 452 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 ZSCAN30Q86W11 494 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 CPNE8Q86YQ8 564 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 ETFBKMTQ8IXQ9 262 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 UMODL1-AS1Q8N2C9 162 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.48□□□□□ -0.89
LDLR-210ENST00000559340 TTC13Q8NBP0 860 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 TTC8Q8TAM2 541 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 KCNV2Q8TDN2 545 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 RAPGEF5Q92565 580 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 TSC1Q92574 1164 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 KRT35Q92764 455 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 EDAQ92838 391 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 FAF2Q96CS3 445 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 PRICKLE1Q96MT3 831 aaPredicted RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 NAP1L3Q99457 506 aaPredicted RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 NAPGQ99747 312 aaPredicted RBP9.48□□□□□ -0.89
LDLR-210ENST00000559340 FERMT1Q9BQL6 677 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 OSBPL8Q9BZF1 889 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 MUC3BQ9H195 1237 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 CARD9Q9H257 536 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 ARHGEF3Q9NR81 526 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 HEBP1Q9NRV9 189 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 MUTYHQ9UIF7 546 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 CA14Q9ULX7 337 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 SLC8A2Q9UPR5 921 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 XIRP2A4UGR9 3374 aa9.48□□□□□ -0.89
LDLR-210ENST00000559340 A0A0A0MRY4 1105 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 CXorf51AA0A1B0GTR3 108 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 ZSCAN5CA6NGD5 496 aaPredicted RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 OTOL1A6NHN0 477 aaPredicted RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 USP27XA6NNY8 438 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 KCNK3O14649 394 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 DDX3YO15523 660 aaKnown RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 KAT7O95251 611 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 CISD3P0C7P0 127 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 PRLRP16471 622 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 TCP1P17987 556 aaKnown RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 TGM2P21980 687 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 CASQ1P31415 396 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 OPRD1P41143 372 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 CDKN2BP42772 138 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 SLC6A11P48066 632 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 NR2C2P49116 596 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 DNA2P51530 1060 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 SGSHP51688 502 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 ETF1P62495 437 aaKnown RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 GNA12Q03113 381 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 LMAN2Q12907 356 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 DPYSQ14117 519 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 PAFAH1B3Q15102 231 aaKnown RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 TAZQ16635 292 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 PARP15Q460N3 678 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 ALFQ53S48 1182 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 TMCO4Q5TGY1 634 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 RNF219Q5W0B1 726 aaPredicted RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 IL31Q6EBC2 164 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 SDE2Q6IQ49 451 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 RETSATQ6NUM9 610 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 MFSD7Q6UXD7 560 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 TRMT11Q7Z4G4 463 aaKnown RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 METTL3Q86U44 580 aaKnown RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 NLRP14Q86W24 1093 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 ZNF354CQ86Y25 554 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 SYNPOQ8N3V7 929 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 NSMCE1Q8WV22 266 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 ACDQ96AP0 544 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 FEM1AQ9BSK4 669 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 C2orf49Q9BVC5 232 aaPredicted RBP9.47□□□□□ -0.89
LDLR-210ENST00000559340 MAGEB5Q9BZ81 275 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 OSBPL6Q9BZF3 934 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 BRD8Q9H0E9 1235 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 MFSD1Q9H3U5 465 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 ABCB8Q9NUT2 735 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 KLHL11Q9NVR0 708 aa9.47□□□□□ -0.89
LDLR-210ENST00000559340 HAUS2Q9NVX0 235 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms