RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 GJA8P48165 433 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 GATMP50440 423 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 TBX4P57082 545 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 GPX6P59796 221 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 CREMQ03060 361 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 NAB1Q13506 487 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 PRPSAP1Q14558 356 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 PSMD5Q16401 504 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 DDR2Q16832 855 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 SPRED3Q2MJR0 410 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 MGAT5BQ3V5L5 792 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 MSS51Q4VC12 460 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 RTP2Q5QGT7 225 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 UBAP2Q5T6F2 1119 aaKnown RBP12.96□□□□□ -0.34
SHMT2-229ENST00000557348 FAM72AQ5TYM5 149 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 ARMC3Q5W041 872 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 NAIF1Q69YI7 327 aaPredicted RBP12.96□□□□□ -0.34
SHMT2-229ENST00000557348 FAM72DQ6L9T8 149 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 KIAA1841Q6NSI8 718 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 LRRC8BQ6P9F7 803 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 ADGRD1Q6QNK2 874 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 FAM72BQ86X60 149 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 RNF168Q8IYW5 571 aaPredicted RBP12.96□□□□□ -0.34
SHMT2-229ENST00000557348 ATAD1Q8NBU5 361 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 FBXO22Q8NEZ5 403 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 CASP10Q92851 521 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 SLC39A13Q96H72 371 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 IGSF21Q96ID5 467 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 BTN2A3PQ96KV6 586 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 ZNF558Q96NG5 402 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 SMC6Q96SB8 1091 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.96□□□□□ -0.34
SHMT2-229ENST00000557348 ZFATQ9P243 1243 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 KLHL8Q9P2G9 620 aaPredicted RBP12.96□□□□□ -0.34
SHMT2-229ENST00000557348 PPARGC1AQ9UBK2 798 aaKnown RBP12.96□□□□□ -0.34
SHMT2-229ENST00000557348 ZC3H7BQ9UGR2 993 aaKnown RBP12.96□□□□□ -0.34
SHMT2-229ENST00000557348 CHMP2BQ9UQN3 213 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 ATP11BQ9Y2G3 1177 aa12.96□□□□□ -0.34
SHMT2-229ENST00000557348 BAIAP3O94812 1187 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 METTL18O95568 372 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 MYCP01106 439 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 BRAFP15056 766 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 PPM1AP35813 382 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 MLLT6P55198 1093 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 ROR2Q01974 943 aaKnown RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 WASHC5Q12768 1159 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 TMED2Q15363 201 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 ZRSR2Q15696 482 aaKnown RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 ANO4Q32M45 955 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 RWDD4Q6NW29 188 aaKnown RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 TRABD2AQ86V40 505 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 CAND1Q86VP6 1230 aaKnown RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 CMTR2Q8IYT2 770 aaKnown RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 LRRC34Q8IZ02 419 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 ATPAF2Q8N5M1 289 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 MAML1Q92585 1016 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 FATE1Q969F0 183 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 TOP1MTQ969P6 601 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 DTNBP1Q96EV8 351 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 FCRL2Q96LA5 508 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 PGLYRP2Q96PD5 576 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 SEPT5Q99719 369 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 EBNA1BP2Q99848 306 aaKnown RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 DHRS4Q9BTZ2 278 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 MAGEB5Q9BZ81 275 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 UBE2OQ9C0C9 1292 aaKnown RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 GBA3Q9H227 469 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 C11orf49Q9H6J7 331 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 NMUR1Q9HB89 426 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 ANLNQ9NQW6 1124 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 TMPRSS4Q9NRS4 437 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 GMIPQ9P107 970 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 AFF4Q9UHB7 1163 aaKnown RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 ZNF180Q9UJW8 692 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 HBS1LQ9Y450 684 aaKnown RBP12.95□□□□□ -0.34
SHMT2-229ENST00000557348 PLXNA3P51805 1871 aa12.95□□□□□ -0.34
SHMT2-229ENST00000557348 TMEM120BA0PK00 339 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 SDR42E2A6NKP2 422 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 POC1B-GALNT4F8VUJ3 575 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 I6L893 689 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-229ENST00000557348 PRPF4O43172 522 aaKnown RBP eCLIP12.94□□□□□ -0.341e-8■■■□□ 17.5
SHMT2-229ENST00000557348 SOD2P04179 222 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 INHBAP08476 426 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 RPSAP08865 295 aaKnown RBP12.94□□□□□ -0.34
SHMT2-229ENST00000557348 KRT15P19012 456 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 PTPN3P26045 913 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 PPP3CCP48454 512 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 CCNHP51946 323 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-229ENST00000557348 ARPP19P56211 112 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 TCTN1Q2MV58 587 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 TEX44Q53QW1 395 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 WASHC2DQ5SRD0 308 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 SLC30A9Q6PML9 568 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 PID1Q7Z2X4 250 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 SDCCAG8Q86SQ7 713 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-229ENST00000557348 TBC1D1Q86TI0 1168 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-229ENST00000557348 LINC00523Q86TU6 105 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 ZNF567Q8N184 647 aa12.94□□□□□ -0.34
SHMT2-229ENST00000557348 TAB3Q8N5C8 712 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-229ENST00000557348 GSDMBQ8TAX9 411 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms