RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MFN1Q8IWA4 741 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 BTBD10Q9BSF8 475 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 ACSS2Q9NR19 701 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 CDH9Q9ULB4 789 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 LOC102724159A0A0B4J2E5 919 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 MFSD11O43934 449 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 NPY2RP49146 381 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 INHBEP58166 350 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 PWP2Q15269 919 aaKnown RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 RNASEH2BQ5TBB1 312 aaKnown RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 ZC3H3Q8IXZ2 948 aaKnown RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 CCDC185Q8N715 623 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 C12orf50Q8NA57 414 aaPredicted RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 HAUS8Q9BT25 410 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 SCUBE2Q9NQ36 999 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 MYH11P35749 1972 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 MYH14Q7Z406 1995 aaKnown RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 SMIM35A0A1B0GVV1 85 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 PPEF2O14830 753 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 XPO1O14980 1071 aaKnown RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 SHOX2O60902 331 aaPredicted RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 TRIM16O95361 564 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 ARHGEF7Q14155 803 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 CA9Q16790 459 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 AP1ARQ63HQ0 302 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 FNIP1Q8TF40 1166 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 CRYGNQ8WXF5 182 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 EFCAB1Q9HAE3 211 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 MAN1C1Q9NR34 630 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 AAASQ9NRG9 546 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 TBC1D13Q9NVG8 400 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 EDIL3O43854 480 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 LYPLA1O75608 230 aaPredicted RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 PIGNO95427 931 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 CCNB1P14635 433 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 ADRA1BP35368 520 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 CTBP1Q13363 440 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 DDX39BQ13838 428 aaKnown RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 SLC25A52Q3SY17 297 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 MFSD5Q6N075 450 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 NEPROQ6NW34 567 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 YTHDF3Q7Z739 585 aaKnown RBP16.6■□□□□ 0.25
CUX1-213ENST00000549414 OMDQ99983 421 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 ABCC13Q9NSE7 274 aa16.6■□□□□ 0.25
CUX1-213ENST00000549414 H7C4K7 107 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 SOAT2O75908 522 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 KRT16P08779 473 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 ATP6V1B1P15313 513 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 CYLC2Q14093 348 aaPredicted RBP16.59■□□□□ 0.25
CUX1-213ENST00000549414 C16orf59Q7L2K0 433 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 SETD3Q86TU7 594 aaPredicted RBP16.59■□□□□ 0.25
CUX1-213ENST00000549414 AGAP11Q8TF27 550 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 TBC1D10AQ9BXI6 508 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 CAB39LQ9H9S4 337 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 TMEM59LQ9UK28 342 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 A8MX80 341 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 UNC5CO95185 931 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 PTP4A2Q12974 167 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 TAS1R3Q7RTX0 852 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 SH3KBP1Q96B97 665 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 EXOC2Q96KP1 924 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 RGS18Q9NS28 235 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 AKAP11Q9UKA4 1901 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 CCDC88AQ3V6T2 1871 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 CRYBG1Q9Y4K1 1723 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 C2CD4BA6NLJ0 364 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 HCRTO43612 131 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 ENTPD5O75356 428 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 VPS26AO75436 327 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 PROCP04070 461 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 OGDHQ02218 1023 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 TBL3Q12788 808 aaKnown RBP16.59■□□□□ 0.25
CUX1-213ENST00000549414 NOL9Q5SY16 702 aaKnown RBP16.59■□□□□ 0.25
CUX1-213ENST00000549414 CERCAMQ5T4B2 595 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 TMPRSS6Q8IU80 811 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 NDNQ99608 321 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 SNX10Q9Y5X0 201 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 ITGA2BP08514 1039 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 CD86P42081 329 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 LILRA4P59901 499 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 ARHGAP1Q07960 439 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 STX5Q13190 355 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 TBCCQ15814 346 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 CNPY4Q8N129 248 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 TLCD1Q96CP7 247 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 KCTD15Q96SI1 283 aaPredicted RBP16.59■□□□□ 0.25
CUX1-213ENST00000549414 KANSL3Q9P2N6 904 aa16.59■□□□□ 0.25
CUX1-213ENST00000549414 FAM95CA0A1B0GW59 222 aa16.58■□□□□ 0.25
CUX1-213ENST00000549414 EDF1O60869 148 aaKnown RBP16.58■□□□□ 0.25
CUX1-213ENST00000549414 GPD2P43304 727 aa16.58■□□□□ 0.25
CUX1-213ENST00000549414 KCNK10P57789 538 aa16.58■□□□□ 0.25
CUX1-213ENST00000549414 KPNB1Q14974 876 aaKnown RBP16.58■□□□□ 0.25
CUX1-213ENST00000549414 BNC2Q6ZN30 1099 aaPredicted RBP16.58■□□□□ 0.25
CUX1-213ENST00000549414 NUDT18Q6ZVK8 323 aa16.58■□□□□ 0.25
CUX1-213ENST00000549414 SLC41A1Q8IVJ1 513 aa16.58■□□□□ 0.25
CUX1-213ENST00000549414 LZTR1Q8N653 840 aa16.58■□□□□ 0.25
CUX1-213ENST00000549414 EFCAB3Q8N7B9 438 aa16.58■□□□□ 0.25
CUX1-213ENST00000549414 PIWIL2Q8TC59 973 aaKnown RBP16.58■□□□□ 0.25
CUX1-213ENST00000549414 MARK4Q96L34 752 aa16.58■□□□□ 0.25
CUX1-213ENST00000549414 PIF1Q9H611 641 aa16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms