RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 WISP1O95388 367 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 ADH1BP00325 375 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 IGLV3-27P01718 113 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 KRT10P13645 584 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 C5AR1P21730 350 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 MAT2AP31153 395 aaKnown RBP13.2□□□□□ -0.3
SCAF11-208ENST00000546534 SLC11A2P49281 568 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 METAP1P53582 386 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 RPS24P62847 133 aaKnown RBP13.2□□□□□ -0.3
SCAF11-208ENST00000546534 GABREP78334 506 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 DAB2P98082 770 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 VAC14Q08AM6 782 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 FSCBQ5H9T9 825 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 CDCP2Q5VXM1 449 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 NADSYN1Q6IA69 706 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.2□□□□□ -0.3
SCAF11-208ENST00000546534 IQCHQ86VS3 1027 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 LSMEM2Q8N112 164 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 HJURPQ8NCD3 748 aaPredicted RBP13.2□□□□□ -0.3
SCAF11-208ENST00000546534 CCDC150Q8NCX0 1101 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 SNRNP27Q8WVK2 155 aaKnown RBP13.2□□□□□ -0.3
SCAF11-208ENST00000546534 KCNE4Q8WWG9 221 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 SEMA4DQ92854 862 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 PTPRN2Q92932 1015 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 IPO9Q96P70 1041 aaKnown RBP13.2□□□□□ -0.3
SCAF11-208ENST00000546534 EXOC1Q9NV70 894 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 CYTH4Q9UIA0 394 aa13.2□□□□□ -0.3
SCAF11-208ENST00000546534 ATMQ13315 3056 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 SPTA1P02549 2419 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 MAPK13O15264 365 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 SLC28A2O43868 658 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 OPA1O60313 960 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 MAGEC1O60732 1142 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 RTN2O75298 545 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 IL1BP01584 269 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 DRD3P35462 400 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 LSSP48449 732 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 ERVPABLB-1P60509 514 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 BST2Q10589 180 aaKnown RBP13.19□□□□□ -0.3
SCAF11-208ENST00000546534 OVGP1Q12889 678 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 STAT4Q14765 748 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 KMT5BQ4FZB7 885 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 PITRM1Q5JRX3 1037 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 NUGGCQ68CJ6 796 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 MSANTD2Q6P1R3 559 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 INTS8Q75QN2 995 aaKnown RBP13.19□□□□□ -0.3
SCAF11-208ENST00000546534 TMC6Q7Z403 805 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 PRPF39Q86UA1 669 aaKnown RBP13.19□□□□□ -0.3
SCAF11-208ENST00000546534 UNC45BQ8IWX7 931 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 CARNMT1Q8N4J0 409 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 TTC39CQ8N584 583 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 OR4C6Q8NH72 309 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 MED8Q96G25 268 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 POLR1BQ9H9Y6 1135 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 TMEM8AQ9HCN3 771 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 ASCL3Q9NQ33 180 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 UCKL1Q9NWZ5 548 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 TSPAN16Q9UKR8 245 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 TRAF3IP3Q9Y228 551 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 CA5BQ9Y2D0 317 aa13.19□□□□□ -0.3
SCAF11-208ENST00000546534 A0A1B0GVM2 712 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 CALUO43852 315 aaPredicted RBP13.18□□□□□ -0.3
SCAF11-208ENST00000546534 YEATS4O95619 227 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 SRPRAP08240 638 aaKnown RBP13.18□□□□□ -0.3
SCAF11-208ENST00000546534 VAV1P15498 845 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 DGKAP23743 735 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 MZF1P28698 734 aaPredicted RBP13.18□□□□□ -0.3
SCAF11-208ENST00000546534 TBX4P57082 545 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 DAOAP59103 153 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 ECT2LQ008S8 904 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 CDH18Q13634 790 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 ADGRD1Q6QNK2 874 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 FAM186BQ8IYM0 893 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 SIX6OS1Q8N1H7 587 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 CFAP52Q8N1V2 620 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 SCML4Q8N228 414 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 UBA3Q8TBC4 463 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 AZIN2Q96A70 460 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 FAM131CQ96AQ9 280 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 FAXDC2Q96IV6 333 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 VCPIP1Q96JH7 1222 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 RPL10LQ96L21 214 aaKnown RBP13.18□□□□□ -0.3
SCAF11-208ENST00000546534 ZNF396Q96N95 335 aaPredicted RBP13.18□□□□□ -0.3
SCAF11-208ENST00000546534 DEPDC7Q96QD5 511 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.18□□□□□ -0.3
SCAF11-208ENST00000546534 DPH1Q9BZG8 443 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 HESX1Q9UBX0 185 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 SERTAD1Q9UHV2 236 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 DMTF1Q9Y222 760 aa13.18□□□□□ -0.3
SCAF11-208ENST00000546534 FFAR2O15552 330 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 CSO75390 466 aaKnown RBP13.17□□□□□ -0.3
SCAF11-208ENST00000546534 MOCS3O95396 460 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 CKMT1AP12532 417 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 MYF5P13349 255 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 KRT13P13646 458 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 LCP1P13796 627 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 NR2F2P24468 414 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 NUDT1P36639 197 aa13.17□□□□□ -0.3
SCAF11-208ENST00000546534 STK19P49842 368 aaPredicted RBP13.17□□□□□ -0.3
SCAF11-208ENST00000546534 ELAVL3Q14576 367 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms