RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 TRAFD1O14545 582 aaPredicted RBP14.99□□□□□ -0.01
HOXC11-202ENST00000546378 EEF1B2P24534 225 aaKnown RBP14.99□□□□□ -0.01
HOXC11-202ENST00000546378 ARL4AP40617 200 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 KCNJ11Q14654 390 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 C11orf91Q3C1V1 193 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 CCDC14Q49A88 953 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 PPP1R2P3Q6NXS1 205 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 LRRC8BQ6P9F7 803 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 PACS1Q6VY07 963 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 LDB1Q86U70 411 aaPredicted RBP14.99□□□□□ -0.01
HOXC11-202ENST00000546378 MYLK4Q86YV6 388 aaPredicted RBP14.99□□□□□ -0.01
HOXC11-202ENST00000546378 TRIM42Q8IWZ5 723 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 FAM110BQ8TC76 370 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 CDHR1Q96JP9 859 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 MRPL45Q9BRJ2 306 aaKnown RBP14.99□□□□□ -0.01
HOXC11-202ENST00000546378 MED10Q9BTT4 135 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 DMAP1Q9NPF5 467 aaPredicted RBP14.99□□□□□ -0.01
HOXC11-202ENST00000546378 TLK1Q9UKI8 766 aa14.99□□□□□ -0.01
HOXC11-202ENST00000546378 KLHL33A6NCF5 533 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 ZBBXA8MT70 800 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 PDLIM1O00151 329 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 SPTLC1O15269 473 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 PARNO95453 639 aaKnown RBP14.98□□□□□ -0.01
HOXC11-202ENST00000546378 TGM2P21980 687 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 ITKQ08881 620 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 DYNC1I2Q13409 638 aaKnown RBP14.98□□□□□ -0.01
HOXC11-202ENST00000546378 ATP1A4Q13733 1029 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 ZNF618Q5T7W0 954 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 KLHDC10Q6PID8 442 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 TMC7Q7Z402 723 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 KCTD4Q8WVF5 259 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 BRI3BPQ8WY22 251 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 C18orf25Q96B23 403 aaPredicted RBP14.98□□□□□ -0.01
HOXC11-202ENST00000546378 CMTM5Q96DZ9 223 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 TIPINQ9BVW5 301 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 USP29Q9HBJ7 922 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 SNX15Q9NRS6 342 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 MICAL3Q7RTP6 2002 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 BOLA2-SMG1P6H3BVE0 249 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 IQCF3P0C7M6 154 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 TXNP10599 105 aaKnown RBP14.98□□□□□ -0.01
HOXC11-202ENST00000546378 EIF4BP23588 611 aaKnown RBP14.98□□□□□ -0.01
HOXC11-202ENST00000546378 MS4A2Q01362 244 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 PDSS2Q86YH6 399 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 DCBLD1Q8N8Z6 715 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 GPRC5AQ8NFJ5 357 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 OR9I1Q8NGQ6 314 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 PKP2Q99959 881 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 CNPY3Q9BT09 278 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 HAUS8Q9BT25 410 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 SLC4A5Q9BY07 1137 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 CAPN14A8MX76 684 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 HNRNPCL1O60812 293 aaKnown RBP14.98□□□□□ -0.01
HOXC11-202ENST00000546378 GPC4O75487 556 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 DESP17661 470 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 KLF10Q13118 480 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 FUT11Q495W5 492 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 NIPA1Q7RTP0 329 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 CYGBQ8WWM9 190 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 NRDE2Q9H7Z3 1164 aa14.98□□□□□ -0.01
HOXC11-202ENST00000546378 ATP6V1G1O75348 118 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 CRTAMO95727 393 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 FDFT1P37268 417 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 NDUFV1P49821 464 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 HDAC4P56524 1084 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 ABCE1P61221 599 aaKnown RBP14.97□□□□□ -0.01
HOXC11-202ENST00000546378 CDKL1Q00532 357 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 TBC1D25Q3MII6 688 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 RARS2Q5T160 578 aaKnown RBP14.97□□□□□ -0.01
HOXC11-202ENST00000546378 WDR49Q8IV35 697 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 OFCC1Q8IZS5 231 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 TMEM79Q9BSE2 394 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 SIX4Q9UIU6 781 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 RUVBL2Q9Y230 463 aaKnown RBP14.97□□□□□ -0.01
HOXC11-202ENST00000546378 XIRP2A4UGR9 3374 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 ZNF839A8K0R7 811 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 KCNU1A8MYU2 1149 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 MFSD11O43934 449 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 PLIN3O60664 434 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 TIPRLO75663 272 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 CNMDO75829 334 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 ARIH2O95376 493 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 MOCS2O96007 188 aaPredicted RBP14.97□□□□□ -0.01
HOXC11-202ENST00000546378 FGF3P11487 239 aaPredicted RBP14.97□□□□□ -0.01
HOXC11-202ENST00000546378 PSMC3P17980 439 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 PDAP1Q13442 181 aaKnown RBP14.97□□□□□ -0.01
HOXC11-202ENST00000546378 KRT72Q14CN4 511 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 PCLAFQ15004 111 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 LDLRAD1Q5T700 205 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 TRIM74Q86UV6 250 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 TRIM73Q86UV7 250 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 ZFP28Q8NHY6 868 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 TRAPPC9Q96Q05 1148 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 ACO2Q99798 780 aaKnown RBP14.97□□□□□ -0.01
HOXC11-202ENST00000546378 NTPCRQ9BSD7 190 aaKnown RBP14.97□□□□□ -0.01
HOXC11-202ENST00000546378 CDT1Q9H211 546 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 PRDM12Q9H4Q4 367 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 NOL11Q9H8H0 719 aaKnown RBP14.97□□□□□ -0.01
HOXC11-202ENST00000546378 KCNH4Q9UQ05 1017 aa14.97□□□□□ -0.01
HOXC11-202ENST00000546378 RNF103-CHMP3A0A140T963 221 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms