RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 ZNF564Q8TBZ8 553 aaPredicted RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 RASGRP4Q8TDF6 673 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PTCD2Q8WV60 388 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 ANKRD49Q8WVL7 239 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SEPT1Q8WYJ6 367 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 EEF2KMTQ96G04 330 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PPP1R10Q96QC0 940 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 PHOX2BQ99453 314 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 TTC1Q99614 292 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 OSBPL11Q9BXB4 747 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 YTHDF1Q9BYJ9 559 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 NMUR2Q9GZQ4 415 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ZNF700Q9H0M5 742 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SMARCAD1Q9H4L7 1026 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PDZD7Q9H5P4 517 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PNPLA3Q9NST1 481 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ANKEF1Q9NU02 776 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 RABGEF1Q9UJ41 708 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 FBXO10Q9UK96 956 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 AJAP1Q9UKB5 411 aaPredicted RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 AP4S1Q9Y587 144 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 KAT6AQ92794 2004 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 A0A0G2JND7 137 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 KPNA4O00629 521 aaPredicted RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 ADAM23O75077 832 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 AKAP3O75969 853 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 C22orf31O95567 290 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 CRTAMO95727 393 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 ASGR1P07306 291 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 MTHFD1P11586 935 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 ATF7P17544 494 aaPredicted RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 RPA1P27694 616 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 CA8P35219 290 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 COG7P83436 770 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 TCERG1LQ5VWI1 586 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 GPR180Q86V85 440 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 EXD1Q8NHP7 514 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 RSAD2Q8WXG1 361 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 HSPBAP1Q96EW2 488 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 DEFB118Q96PH6 123 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SRPK1Q96SB4 655 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 PLIN2Q99541 437 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SERPINI1Q99574 410 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 TEKT3Q9BXF9 490 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 INTS2Q9H0H0 1204 aaKnown RBP5.39□□□□□ -1.55
USP28-213ENST00000544967 RNF208Q9H0X6 261 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 GID8Q9NWU2 228 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 DNAJC28Q9NX36 388 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 KLHL3Q9UH77 587 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SLC8A2Q9UPR5 921 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 SSUH2Q9Y2M2 353 aa5.39□□□□□ -1.55
USP28-213ENST00000544967 PFDN6O15212 129 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SPOPO43791 374 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 DKC1O60832 514 aaKnown RBP eCLIP5.38□□□□□ -1.55
USP28-213ENST00000544967 RSL1D1O76021 490 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 H6PDO95479 791 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 BAG2O95816 211 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 FTLP02792 175 aaPredicted RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 NTRK1P04629 796 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PFKMP08237 780 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SRGAP2CP0DJJ0 459 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PLS3P13797 630 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ADRA1DP25100 572 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PEX2P28328 305 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PCSK6P29122 969 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SSTR3P32745 418 aaPredicted RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 PSEN2P49810 448 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 HK2P52789 917 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ALCAMQ13740 583 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 GPNMBQ14956 572 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 LRRC26Q2I0M4 334 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 TEX44Q53QW1 395 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 NANOGNBQ7Z5D8 188 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 NECAB2Q7Z6G3 386 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ZNF677Q86XU0 584 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 LSMEM2Q8N112 164 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 FBXW8Q8N3Y1 598 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PACRGLQ8N7B6 248 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ATP6V0D2Q8N8Y2 350 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 TNIP2Q8NFZ5 429 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 LMO3Q8TAP4 145 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 TCP10LQ8TDR4 215 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 USP33Q8TEY7 942 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 NKD2Q969F2 451 aaPredicted RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 DNAJC1Q96KC8 554 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 GPATCH1Q9BRR8 931 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 ZNF577Q9BSK1 485 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 THTPAQ9BU02 230 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 TMUB1Q9BVT8 246 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PCDH9Q9HC56 1237 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SLC38A7Q9NVC3 462 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PIH1D1Q9NWS0 290 aaKnown RBP5.38□□□□□ -1.55
USP28-213ENST00000544967 ERAP1Q9NZ08 941 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 STK39Q9UEW8 545 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 LIMD1Q9UGP4 676 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 CARD8Q9Y2G2 431 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 ZNF711Q9Y462 761 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 PCDHA10Q9Y5I2 948 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 AP4B1Q9Y6B7 739 aa5.38□□□□□ -1.55
USP28-213ENST00000544967 SMIM35A0A1B0GVV1 85 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms