RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TTC9Q92623 222 aa13.28□□□□□ -0.28
USP28-212ENST00000544750 EEF2KMTQ96G04 330 aa13.28□□□□□ -0.28
USP28-212ENST00000544750 FCRL2Q96LA5 508 aaPredicted RBP13.28□□□□□ -0.28
USP28-212ENST00000544750 ZNF578Q96N58 590 aaPredicted RBP13.28□□□□□ -0.28
USP28-212ENST00000544750 CYTH4Q9UIA0 394 aa13.28□□□□□ -0.28
USP28-212ENST00000544750 TBC1D3DA0A087WVF3 549 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 TBC1D3IA0A087WXS9 549 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 TBC1D3EA0A087X179 549 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 TBC1D3KA0A087X1G2 549 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 TBC1D3FA6NER0 549 aaPredicted RBP13.27□□□□□ -0.29
USP28-212ENST00000544750 TBC1D3LB9A6J9 549 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 RHOBTB3O94955 611 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 MYL1P05976 194 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 FYNP06241 537 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 TBC1D3HP0C7X1 549 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 GIMD1P0DJR0 217 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 SETSIPP0DME0 302 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 MZF1P28698 734 aaPredicted RBP13.27□□□□□ -0.29
USP28-212ENST00000544750 MXI1P50539 228 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 METAP1P53582 386 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 TBX4P57082 545 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 PCBP4P57723 403 aaKnown RBP13.27□□□□□ -0.29
USP28-212ENST00000544750 OVGP1Q12889 678 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 ZNF211Q13398 564 aaPredicted RBP13.27□□□□□ -0.29
USP28-212ENST00000544750 MS4A13Q5J8X5 152 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 TBC1D3GQ6DHY5 549 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 TBC1D3CQ6IPX1 549 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 TBC1D3Q8IZP1 549 aaPredicted RBP13.27□□□□□ -0.29
USP28-212ENST00000544750 APCDD1Q8J025 514 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 SIX6OS1Q8N1H7 587 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 CARNMT1Q8N4J0 409 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 UBA3Q8TBC4 463 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 SLC35F5Q8WV83 523 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 IRGQQ8WZA9 623 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 SLC39A13Q96H72 371 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 LGMNQ99538 433 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 NUCKS1Q9H1E3 243 aaKnown RBP13.27□□□□□ -0.29
USP28-212ENST00000544750 KDM4CQ9H3R0 1056 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 CPNE5Q9HCH3 593 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 HESX1Q9UBX0 185 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 USP25Q9UHP3 1055 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 COQ4Q9Y3A0 265 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 BSNQ9UPA5 3926 aa13.27□□□□□ -0.29
USP28-212ENST00000544750 PLRG1O43660 514 aaKnown RBP13.26□□□□□ -0.29
USP28-212ENST00000544750 MAGEC1O60732 1142 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 SDC3O75056 442 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 LUC7L3O95232 432 aaKnown RBP13.26□□□□□ -0.29
USP28-212ENST00000544750 LTFP02788 710 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 PRR29P0C7W0 189 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 VDRP11473 427 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 LCP1P13796 627 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 NUDT1P36639 197 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 SYKP43405 635 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 TMPRSS3P57727 454 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 ECT2LQ008S8 904 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 NNTQ13423 1086 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 ADAM9Q13443 819 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 ELAVL3Q14576 367 aaKnown RBP13.26□□□□□ -0.29
USP28-212ENST00000544750 TAF1BQ53T94 588 aaPredicted RBP13.26□□□□□ -0.29
USP28-212ENST00000544750 DCAF6Q58WW2 860 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 PMF1Q6P1K2 205 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.26□□□□□ -0.29
USP28-212ENST00000544750 PRPF39Q86UA1 669 aaKnown RBP13.26□□□□□ -0.29
USP28-212ENST00000544750 TRIM69Q86WT6 500 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 GUF1Q8N442 669 aaKnown RBP13.26□□□□□ -0.29
USP28-212ENST00000544750 OR4C6Q8NH72 309 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 CLEC4CQ8WTT0 213 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 FRS2Q8WU20 508 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 RPL10LQ96L21 214 aaKnown RBP13.26□□□□□ -0.29
USP28-212ENST00000544750 ZSWIM1Q9BR11 485 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 SARDHQ9UL12 918 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 DMTF1Q9Y222 760 aa13.26□□□□□ -0.29
USP28-212ENST00000544750 LY6G6EA0A0G2JKS1 128 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 B8ZZF3 427 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 SLC7A4O43246 635 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 LZTS3O60299 673 aaPredicted RBP13.25□□□□□ -0.29
USP28-212ENST00000544750 RTN2O75298 545 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 IL1BP01584 269 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 VAV1P15498 845 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 RPL13P26373 211 aaKnown RBP13.25□□□□□ -0.29
USP28-212ENST00000544750 STK19P49842 368 aaPredicted RBP13.25□□□□□ -0.29
USP28-212ENST00000544750 UCNP55089 124 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 ERVPABLB-1P60509 514 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 CUL2Q13617 745 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 CDH18Q13634 790 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 CBWD6Q4V339 395 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 CBWD3Q5JTY5 395 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 CBWD5Q5RIA9 395 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 ARHGAP40Q5TG30 622 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 AGBL4Q5VU57 503 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 LCLAT1Q6UWP7 414 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 CFAP52Q8N1V2 620 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 TMEM145Q8NBT3 493 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 TFAP2BQ92481 460 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 NAF1Q96HR8 494 aaKnown RBP13.25□□□□□ -0.29
USP28-212ENST00000544750 DDX50Q9BQ39 737 aaKnown RBP13.25□□□□□ -0.29
USP28-212ENST00000544750 ASCL3Q9NQ33 180 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 UCKL1Q9NWZ5 548 aa13.25□□□□□ -0.29
USP28-212ENST00000544750 XPO7Q9UIA9 1087 aaKnown RBP13.25□□□□□ -0.29
USP28-212ENST00000544750 MAPK8IP1Q9UQF2 711 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms