RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 FAM45AQ8TCE6 357 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 SPATA5L1Q9BVQ7 753 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 PACSIN1Q9BY11 444 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TMEM245Q9H330 911 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 NSUN3Q9H649 340 aaKnown RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 RUVBL2Q9Y230 463 aaKnown RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 UMODL1Q5DID0 1318 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 RBAK-RBAKDNI3L0D1 243 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 IRF6O14896 467 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 GLP2RO95838 553 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 NDUFB10O96000 172 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 KRT6AP02538 564 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 KRT6BP04259 564 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 CHI3L1P36222 383 aaPredicted RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ARRB1P49407 418 aaPredicted RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 CLK1P49759 484 aaKnown RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TNK2Q07912 1038 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF177Q13360 481 aaPredicted RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 LRRC14Q15048 493 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 BMT2Q1RMZ1 405 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ERAP2Q6P179 960 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 POLNQ7Z5Q5 900 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 TCAIMQ8N3R3 496 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 SLITRK2Q9H156 845 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 ANKZF1Q9H8Y5 726 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 DDX28Q9NUL7 540 aaKnown RBP7.97□□□□□ -1.13
VPS13D-211ENST00000543710 RGL1Q9NZL6 768 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 RPS6KA6Q9UK32 745 aa7.97□□□□□ -1.13
VPS13D-211ENST00000543710 A0A087WZ62 844 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 A0A088AWK7 358 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 TRIM49D1C9J1S8 452 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 TRAFD1O14545 582 aaPredicted RBP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 MEIS2O14770 477 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 SNAP91O60641 907 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 RASGRP1O95267 797 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 PABPC1P11940 636 aaKnown RBP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF10P21506 573 aaPredicted RBP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 CDK18Q07002 472 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 SPIRE1Q08AE8 756 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 MAPK11Q15759 364 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 EFCAB12Q6NXP0 572 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 MZT2BQ6NZ67 158 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 TMC3Q7Z5M5 1100 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 RIOX2Q8IUF8 465 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 MIER2Q8N344 545 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 OR6P1Q8NGX9 317 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 B4GALNT2Q8NHY0 566 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 CDC26Q8NHZ8 85 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 BAP1Q92560 729 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 C18orf25Q96B23 403 aaPredicted RBP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 SLC29A3Q9BZD2 475 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 SMURF2Q9HAU4 748 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 CROTQ9UKG9 612 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF541Q9H0D2 1346 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 SLIT2O94813 1529 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 FAM220BPB1ANY3 271 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 PDE5AO76074 875 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 ITGAVP06756 1048 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 ENO3P13929 434 aaPredicted RBP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 TGFBR2P37173 567 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 TALDO1P37837 337 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 GP5P40197 560 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 RAP1GAPP47736 663 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 NUDT2P50583 147 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 POU5F1Q01860 360 aaKnown RBP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 RASA2Q15283 850 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 INAQ16352 499 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 ATP6AP1LQ52LC2 224 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 ZNF394Q53GI3 561 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 NEK10Q6ZWH5 1172 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 STRADAQ7RTN6 431 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 C12orf56Q8IXR9 622 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 ATP8B4Q8TF62 1192 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 WDCPQ9H6R7 721 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 IL23AQ9NPF7 189 aa7.96□□□□□ -1.13
VPS13D-211ENST00000543710 IARS2Q9NSE4 1012 aaKnown RBP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 CORO1CQ9ULV4 474 aaPredicted RBP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 BARX2Q9UMQ3 279 aaPredicted RBP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.96□□□□□ -1.13
VPS13D-211ENST00000543710 ASNA1O43681 348 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 CST8O60676 142 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 RB1P06400 928 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 OCM2P0CE71 109 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 OCMP0CE72 109 aaPredicted RBP7.96□□□□□ -1.14
VPS13D-211ENST00000543710 GUCY1A2P33402 732 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 GLUD2P49448 558 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 PSEN1P49768 467 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 DGKEP52429 567 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 PNLIPRP1P54315 467 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 SMARCB1Q12824 385 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 SLC29A2Q14542 456 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 RCN1Q15293 331 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 OTOP1Q7RTM1 612 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 PTF1AQ7RTS3 328 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 RD3Q7Z3Z2 195 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 MCOLN2Q8IZK6 566 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 CHP1Q99653 195 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 TIMMDC1Q9NPL8 285 aa7.96□□□□□ -1.14
VPS13D-211ENST00000543710 PXMP2Q9NR77 195 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms