RNA–Protein interactions for RNA: ENST00000540408.5

COPS7A-211, Transcript of COP9 signalosome subunit 7A, humanhuman

TSL 2

Gene COPS7A, Length 569 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS7A-211ENST00000540408 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.9□□□□□ -0.34
COPS7A-211ENST00000540408 MMS22LQ6ZRQ5 1243 aa12.9□□□□□ -0.34
COPS7A-211ENST00000540408 LGI2Q8N0V4 545 aa12.9□□□□□ -0.34
COPS7A-211ENST00000540408 MFSD2AQ8NA29 543 aa12.9□□□□□ -0.34
COPS7A-211ENST00000540408 PTPRN2Q92932 1015 aa12.9□□□□□ -0.34
COPS7A-211ENST00000540408 RPL10LQ96L21 214 aaKnown RBP12.9□□□□□ -0.34
COPS7A-211ENST00000540408 SPAG5Q96R06 1193 aa12.9□□□□□ -0.34
COPS7A-211ENST00000540408 NUCKS1Q9H1E3 243 aaKnown RBP12.9□□□□□ -0.34
COPS7A-211ENST00000540408 GOLPH3LQ9H4A5 285 aa12.9□□□□□ -0.34
COPS7A-211ENST00000540408 HOOK1Q9UJC3 728 aaKnown RBP12.9□□□□□ -0.34
COPS7A-211ENST00000540408 NAALADL1Q9UQQ1 740 aa12.9□□□□□ -0.34
COPS7A-211ENST00000540408 APC2O95996 2303 aa12.9□□□□□ -0.34
COPS7A-211ENST00000540408 GOLGA6L4A6NEF3 574 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 F5H5T6 163 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 RNF225M0QZC1 329 aaPredicted RBP12.89□□□□□ -0.35
COPS7A-211ENST00000540408 CBX4O00257 560 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 GABBR2O75899 941 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 TACR2P21452 398 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 MZF1P28698 734 aaPredicted RBP12.89□□□□□ -0.35
COPS7A-211ENST00000540408 CTSOP43234 321 aaPredicted RBP12.89□□□□□ -0.35
COPS7A-211ENST00000540408 OVGP1Q12889 678 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 BNIP3Q12983 259 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 RTP5Q14D33 572 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 SHBQ15464 509 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 CCDC40Q4G0X9 1142 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 RAP1GAP2Q684P5 730 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 FBXL19Q6PCT2 694 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 BEND5Q7L4P6 421 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 IQCHQ86VS3 1027 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 CHSY1Q86X52 802 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 APCDD1Q8J025 514 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 AADATQ8N5Z0 425 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 ATP6V0D2Q8N8Y2 350 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 ADAM32Q8TC27 787 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 OR8D1Q8WZ84 308 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 SLC39A7Q92504 469 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 TSC1Q92574 1164 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 SLC39A13Q96H72 371 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 CRELD1Q96HD1 420 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 BTN2A3PQ96KV6 586 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 MED15Q96RN5 788 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.89□□□□□ -0.35
COPS7A-211ENST00000540408 DMTF1Q9Y222 760 aa12.89□□□□□ -0.35
COPS7A-211ENST00000540408 COL5A1P20908 1838 aaPredicted RBP12.89□□□□□ -0.35
COPS7A-211ENST00000540408 PSMA7O14818 248 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 WNT9AO14904 365 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 PMM2O15305 246 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 P4HA2O15460 535 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 SLC7A4O43246 635 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 MED7O43513 233 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 LATO43561 262 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 FYNP06241 537 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 SLC2A3P11169 496 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 ZNF18P17022 549 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 ITPKBP27987 946 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 ACTN2P35609 894 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 E2F1Q01094 437 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 CCDC15Q0P6D6 951 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 ACCSLQ4AC99 568 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 TTC39BQ5VTQ0 682 aaPredicted RBP12.88□□□□□ -0.35
COPS7A-211ENST00000540408 RRAGAQ7L523 313 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 CACTIN-AS1Q8N1I8 211 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 LSM14AQ8ND56 463 aaKnown RBP12.88□□□□□ -0.35
COPS7A-211ENST00000540408 FGF11Q92914 225 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 SMARCE1Q969G3 411 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 MYEOVQ96EZ4 313 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 POPDC2Q9HBU9 364 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 SLC25A13Q9UJS0 675 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 CLCA2Q9UQC9 943 aa12.88□□□□□ -0.35
COPS7A-211ENST00000540408 PLXNA2O75051 1894 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 TRIM49BA6NDI0 452 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 KCNU1A8MYU2 1149 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 C1QTNF3-AMACRE9PGA6 284 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 TRUB2O95900 331 aaKnown RBP12.87□□□□□ -0.35
COPS7A-211ENST00000540408 PDGFRAP16234 1089 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 GLDCP23378 1020 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 MAT2AP31153 395 aaKnown RBP12.87□□□□□ -0.35
COPS7A-211ENST00000540408 PPP1R2P41236 205 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 GPD2P43304 727 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 STK19P49842 368 aaPredicted RBP12.87□□□□□ -0.35
COPS7A-211ENST00000540408 PMS1P54277 932 aaKnown RBP12.87□□□□□ -0.35
COPS7A-211ENST00000540408 CLDN6P56747 220 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 YWHAZP63104 245 aaKnown RBP12.87□□□□□ -0.35
COPS7A-211ENST00000540408 GCNT1Q02742 428 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 SETMARQ53H47 684 aaPredicted RBP12.87□□□□□ -0.35
COPS7A-211ENST00000540408 ZC3H12AQ5D1E8 599 aaKnown RBP12.87□□□□□ -0.35
COPS7A-211ENST00000540408 RABGAP1LQ5R372 815 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 SFMBT2Q5VUG0 894 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 SYPL2Q5VXT5 272 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 TAC4Q86UU9 113 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 STK32AQ8WU08 396 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 RNF34Q969K3 372 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 DHTKD1Q96HY7 919 aaPredicted RBP12.87□□□□□ -0.35
COPS7A-211ENST00000540408 CEP63Q96MT8 703 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 FCRL3Q96P31 734 aaPredicted RBP12.87□□□□□ -0.35
COPS7A-211ENST00000540408 ZSWIM1Q9BR11 485 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 PRORYQ9H606 182 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 CYTH4Q9UIA0 394 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 ZDHHC9Q9Y397 364 aa12.87□□□□□ -0.35
COPS7A-211ENST00000540408 FARP1Q9Y4F1 1045 aaPredicted RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms