RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 PLK1P53350 603 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 NXPH1P58417 271 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 SULT2A1Q06520 285 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 CCDC157Q569K6 752 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 SLC45A4Q5BKX6 768 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 SYPL2Q5VXT5 272 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 KANSL1Q7Z3B3 1105 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 APCDD1Q8J025 514 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 LGI2Q8N0V4 545 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 STK40Q8N2I9 435 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 MFSD2AQ8NA29 543 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 OR14C36Q8NHC7 312 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 ADAM32Q8TC27 787 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 SMARCE1Q969G3 411 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 DHTKD1Q96HY7 919 aaPredicted RBP14.02□□□□□ -0.17
SS18-204ENST00000539244 SERAC1Q96JX3 654 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 BTN2A3PQ96KV6 586 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 SLC4A5Q9BY07 1137 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 KDM4CQ9H3R0 1056 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 MYLKQ15746 1914 aa14.02□□□□□ -0.17
SS18-204ENST00000539244 TLR4O00206 839 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 CBX4O00257 560 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 SLC7A4O43246 635 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 MOCS2O96007 188 aaPredicted RBP14.01□□□□□ -0.17
SS18-204ENST00000539244 JUPP14923 745 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 NUDT1P36639 197 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 PPP1R2P41236 205 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 ABCG1P45844 678 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 OVGP1Q12889 678 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 DNAJC3Q13217 504 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 ILKQ13418 452 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 ZC3H12AQ5D1E8 599 aaKnown RBP14.01□□□□□ -0.17
SS18-204ENST00000539244 C6orf118Q5T5N4 469 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 TTC39BQ5VTQ0 682 aaPredicted RBP14.01□□□□□ -0.17
SS18-204ENST00000539244 RNF219Q5W0B1 726 aaPredicted RBP14.01□□□□□ -0.17
SS18-204ENST00000539244 RAP1GAP2Q684P5 730 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 NAPEPLDQ6IQ20 393 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 FBXL19Q6PCT2 694 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 RRAGAQ7L523 313 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 TMEM110Q86TL2 294 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 IQCHQ86VS3 1027 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 CHSY1Q86X52 802 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 ARHGEF19Q8IW93 802 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 CACTIN-AS1Q8N1I8 211 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 FRS2Q8WU20 508 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 RPL10LQ96L21 214 aaKnown RBP14.01□□□□□ -0.17
SS18-204ENST00000539244 KREMEN1Q96MU8 473 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 TIGD1Q96MW7 591 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 SPAG5Q96R06 1193 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 PRMT1Q99873 361 aaKnown RBP14.01□□□□□ -0.17
SS18-204ENST00000539244 NRSN2Q9GZP1 204 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 POPDC2Q9HBU9 364 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 ST7Q9NRC1 585 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 ARHGAP20Q9P2F6 1191 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 TJP2Q9UDY2 1190 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 CEP83Q9Y592 693 aa14.01□□□□□ -0.17
SS18-204ENST00000539244 BPTFQ12830 3046 aa14□□□□□ -0.17
SS18-204ENST00000539244 KCNU1A8MYU2 1149 aa14□□□□□ -0.17
SS18-204ENST00000539244 F5H5T6 163 aa14□□□□□ -0.17
SS18-204ENST00000539244 CAPN9O14815 690 aa14□□□□□ -0.17
SS18-204ENST00000539244 TRUB2O95900 331 aaKnown RBP14□□□□□ -0.17
SS18-204ENST00000539244 IL1BP01584 269 aa14□□□□□ -0.17
SS18-204ENST00000539244 CD44P16070 742 aaKnown RBP14□□□□□ -0.17
SS18-204ENST00000539244 NNMTP40261 264 aa14□□□□□ -0.17
SS18-204ENST00000539244 STK19P49842 368 aaPredicted RBP14□□□□□ -0.17
SS18-204ENST00000539244 PPP2CBP62714 309 aa14□□□□□ -0.17
SS18-204ENST00000539244 YWHAZP63104 245 aaKnown RBP14□□□□□ -0.17
SS18-204ENST00000539244 PPP2CAP67775 309 aa14□□□□□ -0.17
SS18-204ENST00000539244 STIM1Q13586 685 aa14□□□□□ -0.17
SS18-204ENST00000539244 RTP5Q14D33 572 aa14□□□□□ -0.17
SS18-204ENST00000539244 CCDC40Q4G0X9 1142 aa14□□□□□ -0.17
SS18-204ENST00000539244 TTI2Q6NXR4 508 aa14□□□□□ -0.17
SS18-204ENST00000539244 SPATS2Q86XZ4 545 aaKnown RBP14□□□□□ -0.17
SS18-204ENST00000539244 ELOA2Q8IYF1 753 aaPredicted RBP14□□□□□ -0.17
SS18-204ENST00000539244 CCAR2Q8N163 923 aaKnown RBP14□□□□□ -0.17
SS18-204ENST00000539244 EID2Q8N6I1 236 aa14□□□□□ -0.17
SS18-204ENST00000539244 EHBP1Q8NDI1 1231 aa14□□□□□ -0.17
SS18-204ENST00000539244 RFFLQ8WZ73 363 aa14□□□□□ -0.17
SS18-204ENST00000539244 ERCC4Q92889 916 aaPredicted RBP14□□□□□ -0.17
SS18-204ENST00000539244 CRELD1Q96HD1 420 aa14□□□□□ -0.17
SS18-204ENST00000539244 MED15Q96RN5 788 aa14□□□□□ -0.17
SS18-204ENST00000539244 THAP9Q9H5L6 903 aa14□□□□□ -0.17
SS18-204ENST00000539244 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14□□□□□ -0.17
SS18-204ENST00000539244 CYTH4Q9UIA0 394 aa14□□□□□ -0.17
SS18-204ENST00000539244 DMTF1Q9Y222 760 aa14□□□□□ -0.17
SS18-204ENST00000539244 DOCK9Q9BZ29 2069 aa14□□□□□ -0.17
SS18-204ENST00000539244 SHROOM3Q8TF72 1996 aa14□□□□□ -0.17
SS18-204ENST00000539244 PTPRQQ9UMZ3 2332 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3DA0A087WVF3 549 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3IA0A087WXS9 549 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3EA0A087X179 549 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3KA0A087X1G2 549 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 A0A1B0GVM2 712 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3FA6NER0 549 aaPredicted RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 TCAF2A6NFQ2 919 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3LB9A6J9 549 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 E5RJQ4 531 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 PLRG1O43660 514 aaKnown RBP13.99□□□□□ -0.17
SS18-204ENST00000539244 MAGEC1O60732 1142 aa13.99□□□□□ -0.17
SS18-204ENST00000539244 TBC1D3HP0C7X1 549 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms