RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 CYP4V2Q6ZWL3 525 aaPredicted RBP13.35□□□□□ -0.27
VPS28-216ENST00000533806 SETD3Q86TU7 594 aaPredicted RBP13.35□□□□□ -0.27
VPS28-216ENST00000533806 KBTBD6Q86V97 674 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 VPS36Q86VN1 386 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 NLRP14Q86W24 1093 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 CCDC117Q8IWD4 279 aaPredicted RBP13.35□□□□□ -0.27
VPS28-216ENST00000533806 FRMD1Q8N878 549 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 ZNF653Q96CK0 615 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 PSMB7Q99436 277 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 CHP1Q99653 195 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.35□□□□□ -0.27
VPS28-216ENST00000533806 TRIM5Q9C035 493 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 MPP6Q9NZW5 540 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 SLCO3A1Q9UIG8 710 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 FZD10Q9ULW2 581 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 ERVW-1Q9UQF0 538 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 SCINQ9Y6U3 715 aa13.35□□□□□ -0.27
VPS28-216ENST00000533806 PTPRZ1P23471 2315 aaPredicted RBP13.34□□□□□ -0.27
VPS28-216ENST00000533806 SRGAP2O75044 1071 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 LRIG2O94898 1065 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 EPHX1P07099 455 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 SRPRAP08240 638 aaKnown RBP13.34□□□□□ -0.27
VPS28-216ENST00000533806 L1CAMP32004 1257 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 ZNF75DP51815 510 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 AIF1P55008 147 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 HNRNPA1L2Q32P51 320 aaKnown RBP13.34□□□□□ -0.27
VPS28-216ENST00000533806 FNDC3BQ53EP0 1204 aaKnown RBP13.34□□□□□ -0.27
VPS28-216ENST00000533806 CCDC122Q5T0U0 273 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 SLFN11Q7Z7L1 901 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 PYROXD2Q8N2H3 581 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 FAM160A2Q8N612 972 aaPredicted RBP13.34□□□□□ -0.27
VPS28-216ENST00000533806 TC2NQ8N9U0 490 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 RLN3Q8WXF3 142 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 RUBCNQ92622 972 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 MRFAP1L1Q96HT8 127 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 ZYG11BQ9C0D3 744 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 SLC6A17Q9H1V8 727 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 MRPL47Q9HD33 250 aaKnown RBP13.34□□□□□ -0.27
VPS28-216ENST00000533806 PRSS16Q9NQE7 514 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 MBD1Q9UIS9 605 aaPredicted RBP13.34□□□□□ -0.27
VPS28-216ENST00000533806 INVSQ9Y283 1065 aa13.34□□□□□ -0.27
VPS28-216ENST00000533806 A0A0D9SEW6 157 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 ILVBLA1L0T0 632 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 AKR1B15C9JRZ8 316 aaPredicted RBP13.33□□□□□ -0.28
VPS28-216ENST00000533806 SYNCRIPO60506 623 aaKnown RBP13.33□□□□□ -0.28
VPS28-216ENST00000533806 LRCH4O75427 683 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 MOCS3O95396 460 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 IGLV3-19P01714 112 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 RETP07949 1114 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 RHOQP17081 205 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 BCKDHBP21953 392 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 PSMA2P25787 234 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 GALCP54803 685 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 GFPT1Q06210 699 aaPredicted RBP13.33□□□□□ -0.28
VPS28-216ENST00000533806 SULT2A1Q06520 285 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 STARD3Q14849 445 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 ACAP1Q15027 740 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 LPAL2Q16609 132 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 C9orf64Q5T6V5 341 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 RNF219Q5W0B1 726 aaPredicted RBP13.33□□□□□ -0.28
VPS28-216ENST00000533806 CEP68Q76N32 757 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 TFAP2DQ7Z6R9 452 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 TMPRSS6Q8IU80 811 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 CNGA4Q8IV77 575 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 DCLK2Q8N568 766 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 ZNF366Q8N895 744 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 NIPA2Q8N8Q9 360 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 OR2T3Q8NH03 318 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 FRS2Q8WU20 508 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 ARHGEF26Q96DR7 871 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 ERLEC1Q96DZ1 483 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 LOXL4Q96JB6 756 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 PEBP4Q96S96 227 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 MTG2Q9H4K7 406 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 ITM2CQ9NQX7 267 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 NDFIP2Q9NV92 336 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 TMEM248Q9NWD8 314 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 USP36Q9P275 1121 aaKnown RBP13.33□□□□□ -0.28
VPS28-216ENST00000533806 BCCIPQ9P287 314 aaKnown RBP eCLIP13.33□□□□□ -0.28
VPS28-216ENST00000533806 MYO1AQ9UBC5 1043 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 SUN2Q9UH99 717 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 DMXL1Q9Y485 3027 aa13.33□□□□□ -0.28
VPS28-216ENST00000533806 IGHV1OR15-9A0A0B4J2B8 117 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 TTC34A8MYJ7 566 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 ATP9BO43861 1147 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 ZNF217O75362 1048 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 ZMPSTE24O75844 475 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 OR1E1P30953 314 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 PCK1P35558 622 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 STK19P49842 368 aaPredicted RBP13.32□□□□□ -0.28
VPS28-216ENST00000533806 C6orf118Q5T5N4 469 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 PMS2CLQ68D20 193 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 SCYL2Q6P3W7 929 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 ZNF783Q6ZMS7 281 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 PRR23BQ6ZRT6 265 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 C11orf74Q86VG3 221 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 PTPRN2Q92932 1015 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 TBC1D31Q96DN5 1066 aa13.32□□□□□ -0.28
VPS28-216ENST00000533806 RPL10LQ96L21 214 aaKnown RBP13.32□□□□□ -0.28
VPS28-216ENST00000533806 PPP1R9BQ96SB3 815 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms