RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 L1CAMP32004 1257 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 ECT2LQ008S8 904 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 ACAP1Q15027 740 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 FNDC3BQ53EP0 1204 aaKnown RBP20.42■□□□□ 0.86
CPSF1-209ENST00000532725 RNF219Q5W0B1 726 aaPredicted RBP20.42■□□□□ 0.86
CPSF1-209ENST00000532725 ASCL5Q7RTU5 278 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 KDM1BQ8NB78 822 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 NUP85Q9BW27 656 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 PACSIN1Q9BY11 444 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 TPSD1Q9BZJ3 242 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 RETREG1Q9H6L5 497 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 WDR87Q6ZQQ6 2873 aa20.42■□□□□ 0.86
CPSF1-209ENST00000532725 PRR23AA6NEV1 266 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 SYNCRIPO60506 623 aaKnown RBP20.41■□□□□ 0.86
CPSF1-209ENST00000532725 RPP40O75818 363 aaKnown RBP20.41■□□□□ 0.86
CPSF1-209ENST00000532725 RNF8O76064 485 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 EPHX1P07099 455 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 SRPRAP08240 638 aaKnown RBP20.41■□□□□ 0.86
CPSF1-209ENST00000532725 MIPP30301 263 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 MRE11P49959 708 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 SULT2A1Q06520 285 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 SIM2Q14190 667 aaPredicted RBP20.41■□□□□ 0.86
CPSF1-209ENST00000532725 STARD3Q14849 445 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 USP39Q53GS9 565 aaKnown RBP20.41■□□□□ 0.86
CPSF1-209ENST00000532725 EFHC2Q5JST6 749 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 TFAP2DQ7Z6R9 452 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 NLRP14Q86W24 1093 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 MRGPRX1Q96LB2 322 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 BCCIPQ9P287 314 aaKnown RBP eCLIP20.41■□□□□ 0.86
CPSF1-209ENST00000532725 SUN2Q9UH99 717 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 SLCO3A1Q9UIG8 710 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 NEU3Q9UQ49 428 aa20.41■□□□□ 0.86
CPSF1-209ENST00000532725 LRCH4O75427 683 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 H2AFZP0C0S5 128 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 C7P10643 843 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 RHOQP17081 205 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 NDUFV2P19404 249 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 OR1E1P30953 314 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 NUMBP49757 651 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 SEMA3BQ13214 749 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 CAMK2GQ13555 558 aaPredicted RBP20.4■□□□□ 0.86
CPSF1-209ENST00000532725 PIGHQ14442 188 aaPredicted RBP20.4■□□□□ 0.86
CPSF1-209ENST00000532725 C6orf118Q5T5N4 469 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 ERMARDQ5T6L9 678 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 RWDD4Q6NW29 188 aaKnown RBP20.4■□□□□ 0.86
CPSF1-209ENST00000532725 CYP4V2Q6ZWL3 525 aaPredicted RBP20.4■□□□□ 0.86
CPSF1-209ENST00000532725 H2AFVQ71UI9 128 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 ALYREFQ86V81 257 aaKnown RBP20.4■□□□□ 0.86
CPSF1-209ENST00000532725 PGBD3Q8N328 593 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 ZNF366Q8N895 744 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 RPL10LQ96L21 214 aaKnown RBP20.4■□□□□ 0.86
CPSF1-209ENST00000532725 PEBP4Q96S96 227 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 NCAPGQ9BPX3 1015 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 MKRN2Q9H000 416 aaKnown RBP20.4■□□□□ 0.86
CPSF1-209ENST00000532725 PRSS16Q9NQE7 514 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 SPTLC3Q9NUV7 552 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 PCSK1NQ9UHG2 260 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 INVSQ9Y283 1065 aa20.4■□□□□ 0.86
CPSF1-209ENST00000532725 EP300Q09472 2414 aaPredicted RBP20.39■□□□□ 0.86
CPSF1-209ENST00000532725 SDK1Q7Z5N4 2213 aa20.39■□□□□ 0.86
CPSF1-209ENST00000532725 DOCK4Q8N1I0 1966 aa20.39■□□□□ 0.86
CPSF1-209ENST00000532725 A0A0D9SEW6 157 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 ILVBLA1L0T0 632 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 DCLK1O15075 740 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 ZBTB24O43167 697 aaPredicted RBP20.39■□□□□ 0.85
CPSF1-209ENST00000532725 RHOCP08134 193 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 PCK1P35558 622 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 VASPP50552 380 aaPredicted RBP20.39■□□□□ 0.85
CPSF1-209ENST00000532725 COPAP53621 1224 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 ST8SIA6P61647 398 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 MAP7D1Q3KQU3 841 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 NIPA2Q8N8Q9 360 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 RLN3Q8WXF3 142 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 TBC1D31Q96DN5 1066 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 ZC3H10Q96K80 434 aaKnown RBP20.39■□□□□ 0.85
CPSF1-209ENST00000532725 BTBD6Q96KE9 485 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 PSMB7Q99436 277 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 MUC3BQ9H195 1237 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 SLC6A17Q9H1V8 727 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 MTG2Q9H4K7 406 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 NDFIP2Q9NV92 336 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 TMEM248Q9NWD8 314 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 IP6K2Q9UHH9 426 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 VPS28Q9UK41 221 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 USP34Q70CQ2 3546 aa20.39■□□□□ 0.85
CPSF1-209ENST00000532725 PTPRZ1P23471 2315 aaPredicted RBP20.39■□□□□ 0.85
CPSF1-209ENST00000532725 OTOGLQ3ZCN5 2332 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 EML5Q05BV3 1969 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 TTC34A8MYJ7 566 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 MYO1FO00160 1098 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 GFRA3O60609 400 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 TMEM253P0C7T8 217 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 P2RY2P41231 377 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 CA9Q16790 459 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 HNRNPA1L2Q32P51 320 aaKnown RBP20.38■□□□□ 0.85
CPSF1-209ENST00000532725 DAB2IPQ5VWQ8 1189 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 ZNF783Q6ZMS7 281 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 CEP68Q76N32 757 aa20.38■□□□□ 0.85
CPSF1-209ENST00000532725 METTL3Q86U44 580 aaKnown RBP20.38■□□□□ 0.85
CPSF1-209ENST00000532725 TMPRSS6Q8IU80 811 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms