RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 GALNT2Q10471 571 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 SLC5A9Q2M3M2 681 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 PRSS36Q5K4E3 855 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 RNASEH2BQ5TBB1 312 aaKnown RBP21.77■■□□□ 1.07
VPS28-212ENST00000530836 HDAC11Q96DB2 347 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 PKNOX2Q96KN3 472 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 GCNAQ96QF7 691 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 ZYG11BQ9C0D3 744 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 C10orf88Q9H8K7 445 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 MRPS23Q9Y3D9 190 aaKnown RBP21.77■■□□□ 1.07
VPS28-212ENST00000530836 MFHAS1Q9Y4C4 1052 aa21.77■■□□□ 1.07
VPS28-212ENST00000530836 MAP3K6O95382 1288 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 MYL4P12829 197 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 RHOQP17081 205 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 CCR2P41597 374 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 AUHQ13825 339 aaKnown RBP21.76■■□□□ 1.07
VPS28-212ENST00000530836 KCTD19Q17RG1 926 aaPredicted RBP21.76■■□□□ 1.07
VPS28-212ENST00000530836 TMEM150AQ86TG1 271 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 PRUNE1Q86TP1 453 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 ZCCHC9Q8N567 271 aaKnown RBP21.76■■□□□ 1.07
VPS28-212ENST00000530836 RTL3Q8N8U3 475 aaKnown RBP21.76■■□□□ 1.07
VPS28-212ENST00000530836 CCNYQ8ND76 341 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 ITFG1Q8TB96 612 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 MRPS31Q92665 395 aaKnown RBP21.76■■□□□ 1.07
VPS28-212ENST00000530836 TCEAL4Q96EI5 215 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 TXLNGYQ9BZA5 131 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 PHACTR1Q9C0D0 580 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 IL21Q9HBE4 155 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 PRKAG3Q9UGI9 489 aa21.76■■□□□ 1.07
VPS28-212ENST00000530836 XPO7Q9UIA9 1087 aaKnown RBP21.76■■□□□ 1.07
VPS28-212ENST00000530836 DRGXA6NNA5 263 aa21.75■■□□□ 1.07
VPS28-212ENST00000530836 HMBSP08397 361 aa21.75■■□□□ 1.07
VPS28-212ENST00000530836 PPIDQ08752 370 aaKnown RBP21.75■■□□□ 1.07
VPS28-212ENST00000530836 TJAP1Q5JTD0 557 aa21.75■■□□□ 1.07
VPS28-212ENST00000530836 CFAP58Q5T655 872 aa21.75■■□□□ 1.07
VPS28-212ENST00000530836 GAREM2Q75VX8 874 aa21.75■■□□□ 1.07
VPS28-212ENST00000530836 ZNF683Q8IZ20 524 aa21.75■■□□□ 1.07
VPS28-212ENST00000530836 PRMT1Q99873 361 aaKnown RBP21.75■■□□□ 1.07
VPS28-212ENST00000530836 DDX50Q9BQ39 737 aaKnown RBP21.75■■□□□ 1.07
VPS28-212ENST00000530836 KLC2Q9H0B6 622 aa21.75■■□□□ 1.07
VPS28-212ENST00000530836 FARP1Q9Y4F1 1045 aaPredicted RBP21.75■■□□□ 1.07
VPS28-212ENST00000530836 ACSL4O60488 711 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 MOSPD3O75425 235 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 LATS1O95835 1130 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 GGCXP38435 758 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 GARSP41250 739 aaKnown RBP21.74■■□□□ 1.07
VPS28-212ENST00000530836 AP1B1Q10567 949 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 OTOP3Q7RTS5 596 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 RELL1Q8IUW5 271 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 ADHFE1Q8IWW8 467 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 NPWQ8N729 165 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 VAT1Q99536 393 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 LGMNQ99538 433 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 KLF16Q9BXK1 252 aaPredicted RBP21.74■■□□□ 1.07
VPS28-212ENST00000530836 FRMD8Q9BZ67 464 aaPredicted RBP21.74■■□□□ 1.07
VPS28-212ENST00000530836 TMEM248Q9NWD8 314 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 VANGL2Q9ULK5 521 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 ATP8A1Q9Y2Q0 1164 aa21.74■■□□□ 1.07
VPS28-212ENST00000530836 A0A0A0MRY4 1105 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 GOLGA6BA6NDN3 693 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 CHADO15335 359 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 OPHN1O60890 802 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 OLFM2O95897 454 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 GABRR2P28476 465 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 PMS2P54278 862 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 ARTNQ5T4W7 220 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 TRMT10CQ7L0Y3 403 aaKnown RBP21.73■■□□□ 1.07
VPS28-212ENST00000530836 GET4Q7L5D6 327 aaPredicted RBP21.73■■□□□ 1.07
VPS28-212ENST00000530836 C14orf80Q86SX3 495 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 TSEN2Q8NCE0 465 aaKnown RBP21.73■■□□□ 1.07
VPS28-212ENST00000530836 SHKBP1Q8TBC3 707 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 P2RY11Q96G91 374 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 SPATA13Q96N96 652 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 TSGA13Q96PP4 275 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 A0A1W2PRU2 124 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 C2orf78A6NCI8 922 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 F5H5T6 163 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 NRG2O14511 850 aaPredicted RBP21.73■■□□□ 1.07
VPS28-212ENST00000530836 HSD17B3P37058 310 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 NDST2P52849 883 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 C5orf22Q49AR2 442 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 FBXL22Q6P050 247 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 PPP1R21Q6ZMI0 780 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 ARHGEF18Q6ZSZ5 1173 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 B4GALNT4Q76KP1 1039 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 NLRP14Q86W24 1093 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 CHSY1Q86X52 802 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 UMODL1-AS1Q8N2C9 162 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 NAT8LQ8N9F0 302 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 CPT1BQ92523 772 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 FGF13Q92913 245 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 MYADMQ96S97 322 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 RUFY1Q96T51 708 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 RNF38Q9H0F5 515 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 PABPC3Q9H361 631 aaKnown RBP21.73■■□□□ 1.07
VPS28-212ENST00000530836 ATXN3LQ9H3M9 355 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 CDH7Q9ULB5 785 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 A0A0C4DFX4 3053 aa21.73■■□□□ 1.07
VPS28-212ENST00000530836 SOBPA7XYQ1 873 aa21.72■■□□□ 1.07
VPS28-212ENST00000530836 STC2O76061 302 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms