RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 SIX6OS1Q8N1H7 587 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 FBXL6Q8N531 539 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 GSTCDQ8NEC7 633 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 SHCBP1Q8NEM2 672 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 SLC22A8Q8TCC7 542 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 JPH3Q8WXH2 748 aaPredicted RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 SEPT1Q8WYJ6 367 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 CELF1Q92879 486 aaKnown RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 SLCO2A1Q92959 643 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 PMEPA1Q969W9 287 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 TMIGD2Q96BF3 282 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 ALKBH8Q96BT7 664 aaKnown RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 FBXL8Q96CD0 374 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 APOPT1Q96IL0 206 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 COG8Q96MW5 612 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 TSNARE1Q96NA8 513 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 RBM15Q96T37 977 aaKnown RBP eCLIP5.95□□□□□ -1.46
CD44-225ENST00000527326 KCNK16Q96T55 309 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 SLC29A1Q99808 456 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 C17orf62Q9BQA9 187 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.95□□□□□ -1.46
CD44-225ENST00000527326 TSSK1BQ9BXA7 367 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 SLC26A6Q9BXS9 759 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 EMILIN2Q9BXX0 1053 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 WWP1Q9H0M0 922 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 QTRT2Q9H974 415 aaKnown RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 MBD2Q9UBB5 411 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 NAGPAQ9UK23 515 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 HDAC9Q9UKV0 1011 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 LRFN2Q9ULH4 789 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 RIMKLBQ9ULI2 386 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 TMEM5Q9Y2B1 443 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 RTCBQ9Y3I0 505 aaKnown RBP5.95□□□□□ -1.46
CD44-225ENST00000527326 TRAF6Q9Y4K3 522 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 NHSL1Q5SYE7 1610 aa5.95□□□□□ -1.46
CD44-225ENST00000527326 A0A087X0T9 212 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 A0A1W2PQ72 361 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 ARHGAP42A6NI28 874 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 A6NL46 340 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 HNRNPCL2B2RXH8 293 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 PI4K2BG5E9Z4 385 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 I3L4J1 428 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 APOL1O14791 398 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 EPHB6O15197 1021 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 DDX3YO15523 660 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 FAM189A1O60320 539 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 SORBS3O60504 671 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 RNGTTO60942 597 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 SERPINI2O75830 405 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 ATE1O95260 518 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 IFNA16P05015 189 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 ENO1P06733 434 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 PGK2P07205 417 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 RPS17P08708 135 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 H2AFZP0C0S5 128 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 MTHFD1P11586 935 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 COL6A1P12109 1028 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 NCAM1P13591 858 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 CCNA2P20248 432 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 NR4A1P22736 598 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 CA4P22748 312 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 GRK2P25098 689 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 GRNP28799 593 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 TRAPPC10P48553 1259 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 ST13P50502 369 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 ARSDP51689 593 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 NDST2P52849 883 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 ARL4CP56559 192 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 BNC1Q01954 994 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 RHAGQ02094 409 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 NRG1Q02297 640 aaPredicted RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 MLLT1Q03111 559 aaPredicted RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 ZNF33BQ06732 778 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 NFATC3Q12968 1075 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 BNIP3Q12983 259 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 KRR1Q13601 381 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 MBTPS1Q14703 1052 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 ARHGAP44Q17R89 818 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 CLEC16AQ2KHT3 1053 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 FBXO43Q4G163 708 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 PLEKHG4Q58EX7 1191 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 HABP4Q5JVS0 413 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 FAM83BQ5T0W9 1011 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 RBM20Q5T481 1227 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 ARHGEF16Q5VV41 709 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 METTL11BQ5VVY1 283 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 RSBN1Q5VWQ0 802 aaPredicted RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 ARL6IP4Q66PJ3 421 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 ATG16L1Q676U5 607 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 UGT3A1Q6NUS8 523 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 LLGL2Q6P1M3 1020 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 RHBDF2Q6PJF5 856 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 SHISA2Q6UWI4 295 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 UNC5AQ6ZN44 842 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 H2AFVQ71UI9 128 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 MRPL10Q7Z7H8 261 aaKnown RBP5.94□□□□□ -1.46
CD44-225ENST00000527326 KBTBD6Q86V97 674 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 SGMS1Q86VZ5 419 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 CHSY1Q86X52 802 aa5.94□□□□□ -1.46
CD44-225ENST00000527326 CARM1Q86X55 608 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms