RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 FTLP02792 175 aaPredicted RBP10.48□□□□□ -0.73
VPS28-204ENST00000526054 GNSP15586 552 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 RRM1P23921 792 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 CD6P30203 668 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 SDC4P31431 198 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 FLT3P36888 993 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 IL12RB1P42701 662 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 SLC11A2P49281 568 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 MAPK8IP2Q13387 824 aaPredicted RBP10.48□□□□□ -0.73
VPS28-204ENST00000526054 EIF4HQ15056 248 aaKnown RBP10.48□□□□□ -0.73
VPS28-204ENST00000526054 SLC25A52Q3SY17 297 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 WDR45BQ5MNZ6 344 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 DCUN1D2Q6PH85 259 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 WDR59Q6PJI9 974 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 PHLDB2Q86SQ0 1253 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 CACUL1Q86Y37 369 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 CPXM2Q8N436 756 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 ATP6V0D2Q8N8Y2 350 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 KDF1Q8NAX2 398 aaPredicted RBP10.48□□□□□ -0.73
VPS28-204ENST00000526054 ZCCHC14Q8WYQ9 949 aaKnown RBP10.48□□□□□ -0.73
VPS28-204ENST00000526054 GATA6Q92908 595 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 RNF34Q969K3 372 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 AZIN2Q96A70 460 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 ZNF653Q96CK0 615 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 SLC39A13Q96H72 371 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 ZNF419Q96HQ0 510 aaPredicted RBP10.48□□□□□ -0.73
VPS28-204ENST00000526054 FCRL2Q96LA5 508 aaPredicted RBP10.48□□□□□ -0.73
VPS28-204ENST00000526054 NPY6RQ99463 290 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 DDX50Q9BQ39 737 aaKnown RBP10.48□□□□□ -0.73
VPS28-204ENST00000526054 CIPCQ9C0C6 399 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 PARVAQ9NVD7 372 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 COX16Q9P0S2 106 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 SLC12A6Q9UHW9 1150 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 FBXO10Q9UK96 956 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 AGO1Q9UL18 857 aaKnown RBP10.48□□□□□ -0.73
VPS28-204ENST00000526054 NEUROG3Q9Y4Z2 214 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 SCINQ9Y6U3 715 aa10.48□□□□□ -0.73
VPS28-204ENST00000526054 A0A087X0T9 212 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 PCNX2A6NKB5 2137 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 SIGLEC16A6NMB1 481 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 ACSL4O60488 711 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 SYNCRIPO60506 623 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 MOCS2O96007 188 aaPredicted RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 FAM228BP0C875 321 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 PDGFRAP16234 1089 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 ABCB4P21439 1286 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 GPD1P21695 349 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 CCR1P32246 355 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 RDXP35241 583 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 PTPN9P43378 593 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 PITX1P78337 314 aaPredicted RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 DEUP1Q05D60 604 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 NME3Q13232 169 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 ENPP2Q13822 863 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 HNRNPDQ14103 355 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 ZNF234Q14588 700 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 E2F5Q15329 346 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 SLC18A3Q16572 532 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 ZC3H12AQ5D1E8 599 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 CCDC122Q5T0U0 273 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 ALKBH5Q6P6C2 394 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 FAM217AQ8IXS0 508 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 ZCCHC9Q8N567 271 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 EMC1Q8N766 993 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 TC2NQ8N9U0 490 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 JOSD2Q8TAC2 188 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 DDI1Q8WTU0 396 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 RXFP2Q8WXD0 754 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 PRCCQ92733 491 aaPredicted RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 PGAP3Q96FM1 320 aaPredicted RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 TOE1Q96GM8 510 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 BTN2A3PQ96KV6 586 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 CCDC42Q96M95 316 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 CFAP57Q96MR6 1250 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 MCEEQ96PE7 176 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 IRX2Q9BZI1 471 aaPredicted RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 MKRN2Q9H000 416 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 ISCUQ9H1K1 167 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 MRPL47Q9HD33 250 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 DNAAF2Q9NVR5 837 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.47□□□□□ -0.73
VPS28-204ENST00000526054 USP36Q9P275 1121 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 IMPACTQ9P2X3 320 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 THAP10Q9P2Z0 257 aaPredicted RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 CNOT8Q9UFF9 292 aaKnown RBP10.47□□□□□ -0.73
VPS28-204ENST00000526054 STOML2Q9UJZ1 356 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 KLK13Q9UKR3 277 aa10.47□□□□□ -0.73
VPS28-204ENST00000526054 TCRBV5S1A1TA0A578 114 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 TYW5A2RUC4 315 aaKnown RBP10.46□□□□□ -0.73
VPS28-204ENST00000526054 C2CD4BA6NLJ0 364 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 H0Y626 953 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 ATMINO43313 823 aaPredicted RBP10.46□□□□□ -0.73
VPS28-204ENST00000526054 TRIM16O95361 564 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 GJB6O95452 261 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 EPHX1P07099 455 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 ACADMP11310 421 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 CD59P13987 128 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 PRKCHP24723 683 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 MAOBP27338 520 aa10.46□□□□□ -0.73
VPS28-204ENST00000526054 TPMTP51580 245 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms