RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 RHOP08100 348 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 GOLGA6DP0CG33 693 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 IRF1P10914 325 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 AVPR1AP37288 418 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 ETFBP38117 255 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 PAPOLAP51003 745 aaKnown RBP16.4■□□□□ 0.22
NUP54-214ENST00000514307 BASP1P80723 227 aaKnown RBP16.4■□□□□ 0.22
NUP54-214ENST00000514307 CYP4F8P98187 520 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 POLD3Q15054 466 aaPredicted RBP16.4■□□□□ 0.22
NUP54-214ENST00000514307 DUSP6Q16828 381 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 TEX44Q53QW1 395 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 C6orf118Q5T5N4 469 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 GPR158Q5T848 1215 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 NADSYN1Q6IA69 706 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 CHST9Q7L1S5 443 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 TMC3Q7Z5M5 1100 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 CROCCP2Q86T23 111 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 CCDC25Q86WR0 208 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 RELL1Q8IUW5 271 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 TDHQ8IZJ6 230 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 PDIK1LQ8N165 341 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 NAT8LQ8N9F0 302 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 CCDC110Q8TBZ0 833 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 IGSF8Q969P0 613 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 TMA16Q96EY4 203 aaKnown RBP16.4■□□□□ 0.22
NUP54-214ENST00000514307 CELF6Q96J87 481 aaKnown RBP16.4■□□□□ 0.22
NUP54-214ENST00000514307 PHACTR1Q9C0D0 580 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 MAGEH1Q9H213 219 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 SMPD4Q9NXE4 827 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 GOLGA6AQ9NYA3 693 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 ATP8A1Q9Y2Q0 1164 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 HCFC2Q9Y5Z7 792 aa16.4■□□□□ 0.22
NUP54-214ENST00000514307 E2F8A0AVK6 867 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 AP3B1O00203 1094 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 RAMP2O60895 175 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 RFPL2O75678 378 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 CCNB1P14635 433 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 MAGEA6P43360 314 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 NRIP1P48552 1158 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 RENBPP51606 427 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 EIF3BP55884 814 aaKnown RBP16.39■□□□□ 0.21
NUP54-214ENST00000514307 HSP90B2PQ58FF3 399 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 TMCO4Q5TGY1 634 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 SPRED2Q7Z698 418 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 CMTM8Q8IZV2 173 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 IQCKQ8N0W5 287 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 NPWQ8N729 165 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 GOLGA6L1Q8N7Z2 621 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 MCUQ8NE86 351 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 UBLCP1Q8WVY7 318 aaPredicted RBP16.39■□□□□ 0.21
NUP54-214ENST00000514307 CPT1BQ92523 772 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 TIFAQ96CG3 184 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 MRPL38Q96DV4 380 aaKnown RBP16.39■□□□□ 0.21
NUP54-214ENST00000514307 CCDC77Q9BR77 488 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 PABPC3Q9H361 631 aaKnown RBP16.39■□□□□ 0.21
NUP54-214ENST00000514307 ETNK1Q9HBU6 452 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 KLHL8Q9P2G9 620 aaPredicted RBP16.39■□□□□ 0.21
NUP54-214ENST00000514307 IPO11Q9UI26 975 aaKnown RBP16.39■□□□□ 0.21
NUP54-214ENST00000514307 HPCAL4Q9UM19 191 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 ARHGAP26Q9UNA1 814 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 NEU3Q9UQ49 428 aa16.39■□□□□ 0.21
NUP54-214ENST00000514307 COLQQ9Y215 455 aaPredicted RBP16.39■□□□□ 0.21
NUP54-214ENST00000514307 FARP1Q9Y4F1 1045 aaPredicted RBP16.39■□□□□ 0.21
NUP54-214ENST00000514307 ZFP37Q9Y6Q3 630 aaPredicted RBP16.39■□□□□ 0.21
NUP54-214ENST00000514307 PLXNA3P51805 1871 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 ERI2A8K979 691 aaKnown RBP16.38■□□□□ 0.21
NUP54-214ENST00000514307 RASA4BC9J798 803 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 ALOX15BO15296 676 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 RASA4O43374 803 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 CNTN5O94779 1100 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 JCHAINP01591 159 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 HSD17B3P37058 310 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 OXCT1P55809 520 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 WASHC5Q12768 1159 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 CBLBQ13191 982 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 HNRNPDQ14103 355 aaKnown RBP16.38■□□□□ 0.21
NUP54-214ENST00000514307 FAM133BQ5BKY9 247 aaKnown RBP16.38■□□□□ 0.21
NUP54-214ENST00000514307 LRIG3Q6UXM1 1119 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 ZNF783Q6ZMS7 281 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 TFAP2DQ7Z6R9 452 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 SETD3Q86TU7 594 aaPredicted RBP16.38■□□□□ 0.21
NUP54-214ENST00000514307 ZNF354CQ86Y25 554 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 ARHGAP12Q8IWW6 846 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 CCDC33Q8N5R6 958 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 SHKBP1Q8TBC3 707 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 SMG7Q92540 1137 aaKnown RBP16.38■□□□□ 0.21
NUP54-214ENST00000514307 PRCCQ92733 491 aaPredicted RBP16.38■□□□□ 0.21
NUP54-214ENST00000514307 TEKT5Q96M29 485 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 TTC25Q96NG3 672 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 SLC22A12Q96S37 553 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 RBM15Q96T37 977 aaKnown RBP eCLIP16.38■□□□□ 0.21
NUP54-214ENST00000514307 TXLNGYQ9BZA5 131 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 SFXN1Q9H9B4 322 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 HCFC1R1Q9NWW0 138 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 CFAP97Q9P2B7 532 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 IGSF9Q9P2J2 1179 aa16.38■□□□□ 0.21
NUP54-214ENST00000514307 MRPS23Q9Y3D9 190 aaKnown RBP16.38■□□□□ 0.21
NUP54-214ENST00000514307 PTPRSQ13332 1948 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 A0A1B0GVM2 712 aa16.37■□□□□ 0.21
NUP54-214ENST00000514307 ILVBLA1L0T0 632 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms