RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 PIAS2O75928 621 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 TRIM49P0CI25 452 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 TRIM49CP0CI26 452 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 ALPPL2P10696 532 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 RBMS1P29558 406 aaKnown RBP11.32□□□□□ -0.6
DDX41-216ENST00000513562 METAP1P53582 386 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 RPS24P62847 133 aaKnown RBP11.32□□□□□ -0.6
DDX41-216ENST00000513562 ECT2LQ008S8 904 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 PPP3CAQ08209 521 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 KCNMA1Q12791 1236 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 STK4Q13043 487 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 CUL4AQ13619 759 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 STK38Q15208 465 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 KMT5BQ4FZB7 885 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 SETMARQ53H47 684 aaPredicted RBP11.32□□□□□ -0.6
DDX41-216ENST00000513562 C3orf38Q5JPI3 329 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 CEP135Q66GS9 1140 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 SHC4Q6S5L8 630 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 CCDC81Q6ZN84 652 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 SCML4Q8N228 414 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 CARNMT1Q8N4J0 409 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 CCDC150Q8NCX0 1101 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 GRAMD1AQ96CP6 724 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 KLHDC7BQ96G42 594 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 APOLD1Q96LR9 279 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 SPAG5Q96R06 1193 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 FAM117AQ9C073 453 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 NLGN3Q9NZ94 848 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 CA5BQ9Y2D0 317 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 FRMD4BQ9Y2L6 1034 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 PCDHGA8Q9Y5G5 932 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 PTPN13Q12923 2485 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 BSNQ9UPA5 3926 aa11.32□□□□□ -0.6
DDX41-216ENST00000513562 MYLKQ15746 1914 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 CDRT15L2A8MXV6 281 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 SPTLC2O15270 562 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 RNGTTO60942 597 aaKnown RBP11.31□□□□□ -0.6
DDX41-216ENST00000513562 LUC7L3O95232 432 aaKnown RBP11.31□□□□□ -0.6
DDX41-216ENST00000513562 MOCS3O95396 460 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 NTRK1P04629 796 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 THEGLP0DJG4 465 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 MYF5P13349 255 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 VAV1P15498 845 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 SYT1P21579 422 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 DUSP3P51452 185 aaPredicted RBP11.31□□□□□ -0.6
DDX41-216ENST00000513562 DAOAP59103 153 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 ENPEPQ07075 957 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 CLN3Q13286 438 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 GOLGA7BQ2TAP0 167 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 ARL13BQ3SXY8 428 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 AGBL4Q5VU57 503 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 RNF219Q5W0B1 726 aaPredicted RBP11.31□□□□□ -0.6
DDX41-216ENST00000513562 INTS8Q75QN2 995 aaKnown RBP11.31□□□□□ -0.6
DDX41-216ENST00000513562 CLEC14AQ86T13 490 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 SIX6OS1Q8N1H7 587 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 MAPK15Q8TD08 544 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 KCTD13Q8WZ19 329 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 PRR11Q96HE9 360 aaPredicted RBP11.31□□□□□ -0.6
DDX41-216ENST00000513562 ABCG4Q9H172 646 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 CNGB3Q9NQW8 809 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 STARD5Q9NSY2 213 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 TSPAN16Q9UKR8 245 aa11.31□□□□□ -0.6
DDX41-216ENST00000513562 TP53BP1Q12888 1972 aaPredicted RBP11.3□□□□□ -0.6
DDX41-216ENST00000513562 PIEZO2Q9H5I5 2752 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 POLR2DO15514 142 aaKnown RBP11.3□□□□□ -0.6
DDX41-216ENST00000513562 KLRC4O43908 158 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 TGM2P21980 687 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 STK19P49842 368 aaPredicted RBP11.3□□□□□ -0.6
DDX41-216ENST00000513562 TBX4P57082 545 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 BST2Q10589 180 aaKnown RBP11.3□□□□□ -0.6
DDX41-216ENST00000513562 LINC00303Q3SY05 128 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 POM121L1PQ3SYA9 428 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 SGO2Q562F6 1265 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 MS4A13Q5J8X5 152 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 C6orf132Q5T0Z8 1188 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 XKR5Q6UX68 686 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 ZNF574Q6ZN55 896 aaPredicted RBP11.3□□□□□ -0.6
DDX41-216ENST00000513562 ATG14Q6ZNE5 492 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 DSG4Q86SJ6 1040 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 CCDC117Q8IWD4 279 aaPredicted RBP11.3□□□□□ -0.6
DDX41-216ENST00000513562 APCDD1Q8J025 514 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 IFI44Q8TCB0 444 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 FRS2Q8WU20 508 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 SEMA4DQ92854 862 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 ATXN7L3BQ96GX2 97 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 RPL10LQ96L21 214 aaKnown RBP11.3□□□□□ -0.6
DDX41-216ENST00000513562 DDX50Q9BQ39 737 aaKnown RBP11.3□□□□□ -0.6
DDX41-216ENST00000513562 DUSP23Q9BVJ7 150 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 NUCKS1Q9H1E3 243 aaKnown RBP11.3□□□□□ -0.6
DDX41-216ENST00000513562 OSBPL2Q9H1P3 480 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 CAAP1Q9H8G2 361 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 TMEM8AQ9HCN3 771 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 PREBQ9HCU5 417 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 EVA1BQ9NVM1 165 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 PPP4R2Q9NY27 417 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 SARDHQ9UL12 918 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 CEP83Q9Y592 693 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 ENTPD2Q9Y5L3 495 aa11.3□□□□□ -0.6
DDX41-216ENST00000513562 MYH10P35580 1976 aa11.29□□□□□ -0.6
DDX41-216ENST00000513562 PMS2P1A4D2B8 440 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms