RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 PALB2Q86YC2 1186 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 HACE1Q8IYU2 909 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 LINC00301Q8NCQ3 95 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 SLC22A17Q8WUG5 538 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 HPS3Q969F9 1004 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 BICD1Q96G01 975 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 MSLNLQ96KJ4 702 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 EXOC2Q96KP1 924 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 ZNF396Q96N95 335 aaPredicted RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 ZMAT2Q96NC0 199 aaKnown RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 ADPGKQ9BRR6 497 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 COLEC11Q9BWP8 271 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 MRPL4Q9BYD3 311 aaKnown RBP4.93□□□□□ -1.62
NUP54-206ENST00000508465 CCSER1Q9C0I3 900 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 HAPLN2Q9GZV7 340 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 NT5C3AQ9H0P0 336 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 CDT1Q9H211 546 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 EPHX3Q9H6B9 360 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 PTPRHQ9HD43 1115 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 MARCH5Q9NX47 278 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 CD207Q9UJ71 328 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 LZTS1Q9Y250 596 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 TNFSF13BQ9Y275 285 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 MSRB2Q9Y3D2 182 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 COX11Q9Y6N1 276 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 WDFY4Q6ZS81 3184 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 ARID2Q68CP9 1835 aa4.93□□□□□ -1.62
NUP54-206ENST00000508465 BRWD1Q9NSI6 2320 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 PLXNA4Q9HCM2 1894 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 SMIM28A0A1B0GU29 152 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 POLR2DO15514 142 aaKnown RBP4.92□□□□□ -1.62
NUP54-206ENST00000508465 CLDN3O15551 220 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 ADAM12O43184 909 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 MBTPS2O43462 519 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 CTSAP10619 480 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 IDEP14735 1019 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 CASP1P29466 404 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 TNFSF9P41273 254 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 STAT6P42226 847 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 ME1P48163 572 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 GUCY2FP51841 1108 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 KCNC3Q14003 757 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 NAB2Q15742 525 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 ARHGAP44Q17R89 818 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 DCAF4L1Q3SXM0 396 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 HERC4Q5GLZ8 1057 aaPredicted RBP4.92□□□□□ -1.62
NUP54-206ENST00000508465 RARS2Q5T160 578 aaKnown RBP4.92□□□□□ -1.62
NUP54-206ENST00000508465 FAM171A1Q5VUB5 890 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 KIAA1841Q6NSI8 718 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 ANKRD54Q6NXT1 300 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 SHC4Q6S5L8 630 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 PRSS55Q6UWB4 352 aaPredicted RBP4.92□□□□□ -1.62
NUP54-206ENST00000508465 CD300LGQ6UXG3 332 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 ALKAL1Q6UXT8 129 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 BMP8AQ7Z5Y6 402 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 SFR1Q86XK3 245 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 CEP57Q86XR8 500 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 GRAMD1CQ8IYS0 662 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 ZSWIM2Q8NEG5 633 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 RIN2Q8WYP3 895 aaPredicted RBP4.92□□□□□ -1.62
NUP54-206ENST00000508465 PPP2R3CQ969Q6 453 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 DHX58Q96C10 678 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 DNAJC19Q96DA6 116 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 RPGRIP1Q96KN7 1286 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 ACAP3Q96P50 834 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 KLHL5Q96PQ7 755 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 RPS6KC1Q96S38 1066 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 TMEM175Q9BSA9 504 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 TIPINQ9BVW5 301 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 CCDC94Q9BW85 323 aaPredicted RBP4.92□□□□□ -1.62
NUP54-206ENST00000508465 BOCQ9BWV1 1114 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 FGFBP2Q9BYJ0 223 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 ZBP1Q9H171 429 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 S1PR5Q9H228 398 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 SYNPO2LQ9H987 977 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 PARVGQ9HBI0 331 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 MRPL17Q9NRX2 175 aaKnown RBP4.92□□□□□ -1.62
NUP54-206ENST00000508465 ANKFY1Q9P2R3 1169 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 EIF2B4Q9UI10 523 aaKnown RBP4.92□□□□□ -1.62
NUP54-206ENST00000508465 RCOR1Q9UKL0 485 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 TBX20Q9UMR3 447 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 PCDHA7Q9UN72 937 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 USP15Q9Y4E8 981 aaPredicted RBP4.92□□□□□ -1.62
NUP54-206ENST00000508465 KIAA1671Q9BY89 1806 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 CUL9Q8IWT3 2517 aa4.92□□□□□ -1.62
NUP54-206ENST00000508465 A0A0B4J269 797 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 UBA6A0AVT1 1052 aaPredicted RBP4.91□□□□□ -1.62
NUP54-206ENST00000508465 LACTBL1A8MY62 500 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 K7ENM7 598 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 INPPL1O15357 1258 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 TEX28O15482 410 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 TBCAO75347 108 aaKnown RBP4.91□□□□□ -1.62
NUP54-206ENST00000508465 TOM1L1O75674 476 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 B3GAT3O94766 335 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 FAM153BP0C7A2 387 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 CXCL8P10145 99 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 MCF2P10911 925 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 BRCC3P46736 316 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 AVPR1BP47901 424 aa4.91□□□□□ -1.62
NUP54-206ENST00000508465 ACOT2P49753 483 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms