RNA–Protein interactions for RNA: ENST00000504557.1

HOXC9-202, Transcript of homeobox C9, humanhuman

TSL 3

Gene HOXC9, Length 581 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9-202ENST00000504557 VPS28Q9UK41 221 aa14.68□□□□□ -0.06
HOXC9-202ENST00000504557 PAXBP1Q9Y5B6 917 aa14.68□□□□□ -0.06
HOXC9-202ENST00000504557 ASCC3Q8N3C0 2202 aaKnown RBP14.68□□□□□ -0.06
HOXC9-202ENST00000504557 DOCK9Q9BZ29 2069 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 FAM47DPA6NHR8 397 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 GOLGA6L19H0YKK7 550 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 SLC30A4O14863 429 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 RHOCP08134 193 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 CCDC172P0C7W6 258 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 KRT3P12035 628 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 VAV1P15498 845 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 RPS14P62263 151 aaKnown RBP14.67□□□□□ -0.06
HOXC9-202ENST00000504557 ZNF776Q68DI1 518 aaPredicted RBP14.67□□□□□ -0.06
HOXC9-202ENST00000504557 CXorf57Q6NSI4 855 aaKnown RBP14.67□□□□□ -0.06
HOXC9-202ENST00000504557 LRSAM1Q6UWE0 723 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 LRRC31Q6UY01 552 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 DNAAF5Q86Y56 855 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 NT5C3BQ969T7 300 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 MYO19Q96H55 970 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 NUSAP1Q9BXS6 441 aaKnown RBP14.67□□□□□ -0.06
HOXC9-202ENST00000504557 WSB2Q9NYS7 404 aaPredicted RBP14.67□□□□□ -0.06
HOXC9-202ENST00000504557 SLC25A13Q9UJS0 675 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 PILRBQ9UKJ0 227 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 TMEM131Q92545 1883 aa14.67□□□□□ -0.06
HOXC9-202ENST00000504557 CNOT1A5YKK6 2376 aaKnown RBP14.67□□□□□ -0.06
HOXC9-202ENST00000504557 LAMA1P25391 3075 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 A0A1B0GTH6 734 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 MED19A0JLT2 244 aaPredicted RBP14.66□□□□□ -0.06
HOXC9-202ENST00000504557 C4orf47A7E2U8 309 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 E9PAM4 449 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 CLDN11O75508 207 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 CALB1P05937 261 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 SRPRAP08240 638 aaKnown RBP14.66□□□□□ -0.06
HOXC9-202ENST00000504557 RFC1P35251 1148 aaPredicted RBP14.66□□□□□ -0.06
HOXC9-202ENST00000504557 NNMTP40261 264 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 PSMD8P48556 350 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 FANCCQ00597 558 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 PTP4A2Q12974 167 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 HNRNPA1L2Q32P51 320 aaKnown RBP14.66□□□□□ -0.06
HOXC9-202ENST00000504557 ZSCAN23Q3MJ62 389 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 CCDC14Q49A88 953 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 SYCP2LQ5T4T6 812 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 DCAF12L1Q5VU92 463 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 DNAJC24Q6P3W2 148 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 PHF13Q86YI8 300 aaPredicted RBP14.66□□□□□ -0.06
HOXC9-202ENST00000504557 MMAAQ8IVH4 418 aaKnown RBP14.66□□□□□ -0.06
HOXC9-202ENST00000504557 STK40Q8N2I9 435 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 FAM172AQ8WUF8 416 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 BAP1Q92560 729 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 PGAP3Q96FM1 320 aaPredicted RBP14.66□□□□□ -0.06
HOXC9-202ENST00000504557 NUP58Q9BVL2 599 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 TAS2R14Q9NYV8 317 aa14.66□□□□□ -0.06
HOXC9-202ENST00000504557 PLXNA2O75051 1894 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 EDDM13A0A1B0GTR0 161 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 MID1O15344 667 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 ATMINO43313 823 aaPredicted RBP14.65□□□□□ -0.06
HOXC9-202ENST00000504557 RNASEH1O60930 286 aaKnown RBP14.65□□□□□ -0.06
HOXC9-202ENST00000504557 SKILP12757 684 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 PTMSP20962 102 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 GPD1P21695 349 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 OXTRP30559 389 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 ACSL1P33121 698 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 CDH4P55283 916 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 MTA1Q13330 715 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 SLC12A1Q13621 1099 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 POM121L1PQ3SYA9 428 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 TTC31Q49AM3 519 aaPredicted RBP14.65□□□□□ -0.06
HOXC9-202ENST00000504557 PPM1JQ5JR12 505 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 SPDYCQ5MJ68 293 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 SFMBT2Q5VUG0 894 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 RWDD4Q6NW29 188 aaKnown RBP14.65□□□□□ -0.06
HOXC9-202ENST00000504557 SCYL2Q6P3W7 929 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 MON1BQ7L1V2 547 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 ERMP1Q7Z2K6 904 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 METTL3Q86U44 580 aaKnown RBP14.65□□□□□ -0.06
HOXC9-202ENST00000504557 DRC7Q8IY82 874 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 ZCCHC9Q8N567 271 aaKnown RBP14.65□□□□□ -0.06
HOXC9-202ENST00000504557 OR2I1PQ8NGU4 316 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 CPLX3Q8WVH0 158 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 FOXJ1Q92949 421 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 MCEEQ96PE7 176 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 FEM1AQ9BSK4 669 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 SPON2Q9BUD6 331 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 MAGEB5Q9BZ81 275 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 HAUS4Q9H6D7 363 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 TMEM9BQ9NQ34 198 aa14.65□□□□□ -0.06
HOXC9-202ENST00000504557 A0A1W2PP55 124 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 ANKRD62A6NC57 917 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 C2CD4BA6NLJ0 364 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 SNAP91O60641 907 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 RNASEH2AO75792 299 aaKnown RBP14.64□□□□□ -0.07
HOXC9-202ENST00000504557 FSBPO95073 299 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 ENGP17813 658 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 RRM1P23921 792 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 OR1E1P30953 314 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 ATXN3P54252 364 aaPredicted RBP14.64□□□□□ -0.07
HOXC9-202ENST00000504557 OXCT1P55809 520 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 UBASH3AP57075 661 aa14.64□□□□□ -0.07
HOXC9-202ENST00000504557 GFPT1Q06210 699 aaPredicted RBP14.64□□□□□ -0.07
HOXC9-202ENST00000504557 SULT2A1Q06520 285 aa14.64□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms