RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 MCM2P49736 904 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 VPS41P49754 854 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 RCAN1P53805 252 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 TLE3Q04726 772 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 SLC12A1Q13621 1099 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 EFR3AQ14156 821 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 DCTN1Q14203 1278 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 LARS2Q15031 903 aaKnown RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 PFKFB3Q16875 520 aaPredicted RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 CC2D1BQ5T0F9 858 aaKnown RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 UBAP2Q5T6F2 1119 aaKnown RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 MIS18BP1Q6P0N0 1132 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 VSTM1Q6UX27 236 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 KIAA1324Q6UXG2 1013 aaKnown RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 ZNF813Q6ZN06 617 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 DEF8Q6ZN54 512 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 MMS22LQ6ZRQ5 1243 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 ANKS1BQ7Z6G8 1248 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 LRRTM4Q86VH4 590 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 CHSY1Q86X52 802 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 CNGA4Q8IV77 575 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 CPOQ8IVL8 374 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 GALNT4Q8N4A0 578 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 PAF1Q8N7H5 531 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 FSIP1Q8NA03 581 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 PNLDC1Q8NA58 520 aaKnown RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 SRFBP1Q8NEF9 429 aaKnown RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 SLC2A12Q8TD20 617 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 ASB12Q8WXK4 309 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 USP13Q92995 863 aaPredicted RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 HIC2Q96JB3 615 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 C5orf34Q96MH7 638 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 PIGSQ96S52 555 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 EIF2AK1Q9BQI3 630 aaKnown RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 TRMOQ9BU70 441 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 RNF26Q9BY78 433 aaPredicted RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 HIPK2Q9H2X6 1198 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 RMI1Q9H9A7 625 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 PLEKHA2Q9HB19 425 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 NOD2Q9HC29 1040 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 PDE11AQ9HCR9 933 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 TXLNGQ9NUQ3 528 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 TMLHEQ9NVH6 421 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 ASNSD1Q9NWL6 643 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 GAR1Q9NY12 217 aaKnown RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 GGA3Q9NZ52 723 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 SEMA5BQ9P283 1151 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 RCE1Q9Y256 329 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 B3GNT3Q9Y2A9 372 aa2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 RRP7AQ9Y3A4 280 aaKnown RBP2.72□□□□□ -1.97
HMGB1P35-201ENST00000503360 SPATA31A1Q5TZJ5 1347 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 CYP3A7-CYP3A51PA0A087WV96 503 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 C3orf70A6NLC5 250 aaPredicted RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 C16orf96A6NNT2 1141 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 BTBD19C9JJ37 291 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 GRM8O00222 908 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 PRYO14603 147 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 SEPT4O43236 478 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 HNRNPRO43390 633 aaKnown RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 TOMM40O96008 361 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 CHN1P15882 459 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 CYP3A7P24462 503 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 HOXD12P35452 270 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 STAT6P42226 847 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 UBE3AQ05086 875 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 POU5F1BQ06416 359 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 SLC14A1Q13336 389 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 KPNB1Q14974 876 aaKnown RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 RBMS2Q15434 407 aaKnown RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 CTXN3Q4LDR2 81 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 ZNF484Q5JVG2 852 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 CCDC70Q6NSX1 233 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 SHC4Q6S5L8 630 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 RANBP10Q6VN20 620 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 SLC39A5Q6ZMH5 540 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 RASGRP2Q7LDG7 609 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 LAS2Q8IYD9 372 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 C16orf71Q8IYS4 520 aaPredicted RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 PTGR2Q8N8N7 351 aaPredicted RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 HERVK_113Q902F9 699 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 ARRDC3Q96B67 414 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 KTI12Q96EK9 354 aaPredicted RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 RBM17Q96I25 401 aaKnown RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 MAELQ96JY0 434 aaKnown RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 RITA1Q96K30 269 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 TBATAQ96M53 351 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 GPR78Q96P69 363 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 NAP1L4Q99733 375 aaKnown RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 TRIM2Q9C040 744 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 ARHGAP39Q9C0H5 1083 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 MAF1Q9H063 256 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 NUAK2Q9H093 628 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 RASSF1Q9NS23 344 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 ARL8BQ9NVJ2 186 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 ICKQ9UPZ9 632 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 DNAJC16Q9Y2G8 782 aa2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 COPG1Q9Y678 874 aaKnown RBP2.71□□□□□ -1.98
HMGB1P35-201ENST00000503360 PRSS47A8MTI9 375 aa2.7□□□□□ -1.98
HMGB1P35-201ENST00000503360 TMEM232C9JQI7 657 aa2.7□□□□□ -1.98
HMGB1P35-201ENST00000503360 ENO1P06733 434 aaKnown RBP2.7□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms