RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ATP6V1B1P15313 513 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 ZNF23P17027 643 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 SLC45A4Q5BKX6 768 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 KCNT2Q6UVM3 1135 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 CCDC81Q6ZN84 652 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 SPATA20Q8TB22 786 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 MTMR9Q96QG7 549 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 KLHL28Q9NXS3 571 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 MAP10Q9P2G4 905 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 PCDHA3Q9Y5H8 950 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 A0A1B0GW55 424 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 BAIAP3O94812 1187 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 DUX4L2P0CJ85 424 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 DUX4L3P0CJ86 424 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 DUX4L4P0CJ87 422 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 DUX4L5P0CJ88 424 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 DUX4L6P0CJ89 424 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 DUX4L7P0CJ90 424 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 CRABP2P29373 138 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 CRYBB1P53674 252 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-215ENST00000496447 RAP1GAP2Q684P5 730 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 WDR59Q6PJI9 974 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 MFSD7Q6UXD7 560 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 C18orf25Q96B23 403 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-215ENST00000496447 COQ7Q99807 217 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 AVENQ9NQS1 362 aaPredicted RBP13.39□□□□□ -0.27
PTPRF-215ENST00000496447 EVA1BQ9NVM1 165 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 DUX4Q9UBX2 424 aa13.39□□□□□ -0.27
PTPRF-215ENST00000496447 WTIPA6NIX2 430 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 E9PBE3 544 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 KLHL41O60662 606 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 MMRN1Q13201 1228 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 CBWD6Q4V339 395 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 WDR60Q8WVS4 1066 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 FAM120BQ96EK7 910 aaKnown RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 SPACA7Q96KW9 195 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 DPY30Q9C005 99 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 DEPDC5O75140 1603 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 XPO1O14980 1071 aaKnown RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 TM4SF1P30408 202 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 PPM1AP35813 382 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 FLT3LGP49771 235 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 ELF3P78545 371 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 TBL3Q12788 808 aaKnown RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 ZC3H12AQ5D1E8 599 aaKnown RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 KCNK18Q7Z418 384 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 RIN3Q8TB24 985 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 CNBD2Q96M20 576 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 SLC4A9Q96Q91 983 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 TMEM245Q9H330 911 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 KCNMB3Q9NPA1 279 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 LRRC4BQ9NT99 713 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 OR12D3Q9UGF7 316 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 SCAMP3O14828 347 aaKnown RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 UBOX5O94941 541 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 ABCB1P08183 1280 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 BGNP21810 368 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 SNRPD1P62314 119 aaKnown RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 MAD2L1Q13257 205 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 ZCCHC8Q6NZY4 707 aaKnown RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 KIF20BQ96Q89 1820 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 ZBTB14O43829 449 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 GJB6O95452 261 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 TRUB2O95900 331 aaKnown RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 POU1F1P28069 291 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 FMO4P31512 558 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 CHKAP35790 457 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 NDUFV1P49821 464 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 SKP1P63208 163 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 INSCQ1MX18 579 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 BNC2Q6ZN30 1099 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 TRIM63Q969Q1 353 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 SMAD5Q99717 465 aaKnown RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 CPNE1Q99829 537 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 PRR23D1E9PI22 279 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 DNALI1O14645 258 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 UBDO15205 165 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 TM9SF1O15321 606 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 PRR23D2P0DMB1 279 aaPredicted RBP13.38□□□□□ -0.27
PTPRF-215ENST00000496447 PSEN1P49768 467 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 PEX5P50542 639 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 PTENP60484 403 aa13.38□□□□□ -0.27
PTPRF-215ENST00000496447 MOXD2PA6NHM9 499 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 CYP2C18P33260 490 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 SKIV2L2P42285 1042 aaKnown RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 PSMD5Q16401 504 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 CYP2A13Q16696 494 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 TREML2Q5T2D2 321 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 ATAD3BQ5T9A4 648 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 N4BP2L1Q5TBK1 243 aaPredicted RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 SERPINA13PQ6UXR4 307 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 NANOGNBQ7Z5D8 188 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 DENND1CQ8IV53 801 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 MICU2Q8IYU8 434 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 MYLPFQ96A32 169 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 KANSL1LA0AUZ9 987 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 M0R3G1 203 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 MT-CO1P00395 513 aa13.37□□□□□ -0.27
PTPRF-215ENST00000496447 EIF2B2P49770 351 aaKnown RBP13.37□□□□□ -0.27
PTPRF-215ENST00000496447 CES3Q6UWW8 571 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms