RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ARNTL2Q8WYA1 636 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 TMEM143Q96AN5 459 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 TMIGD2Q96BF3 282 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 ISOC1Q96CN7 298 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 DRC3Q9H069 523 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 CPSF3Q9UKF6 684 aaKnown RBP9.89□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF232Q9UNY5 417 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 AP4S1Q9Y587 144 aa9.89□□□□□ -0.83
SYNE1-230ENST00000495090 TRIM64BA6NI03 449 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 NOP56O00567 594 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SERPINB7O75635 380 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 VAPBO95292 243 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TNNC2P02585 160 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 OATP04181 439 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ALDH2P05091 517 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 NR3C2P08235 984 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ASNSP08243 561 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 HOXC6P09630 235 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PTPN1P18031 435 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SPRP35270 261 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 MLH1P40692 756 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TNFSF9P41273 254 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 STT3AP46977 705 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 RPL14P50914 215 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 NDST2P52849 883 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 LIMK2P53671 638 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PKNOX1P55347 436 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 OXCT1P55809 520 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 RELAQ04206 551 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 NSUN2Q08J23 767 aaKnown RBP eCLIP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PRKAA1Q13131 559 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PPIL2Q13356 520 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 MPP3Q13368 585 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PPM1JQ5JR12 505 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SPANXN3Q5MJ09 141 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SH3PXD2AQ5TCZ1 1133 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 NAPRTQ6XQN6 538 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TNIP2Q8NFZ5 429 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ANKRD36BP1Q96IX9 119 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 RBBP8Q99708 897 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ACO2Q99798 780 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SLX1AQ9BQ83 275 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TMEM79Q9BSE2 394 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 OXCT2Q9BYC2 517 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 MRPL4Q9BYD3 311 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 NIFKQ9BYG3 293 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 IL22Q9GZX6 179 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 FAM124BQ9H5Z6 455 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 COQ10BQ9H8M1 238 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TMEM165Q9HC07 324 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 RAVER2Q9HCJ3 691 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 OXSMQ9NWU1 459 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SARDHQ9UL12 918 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 MAFBQ9Y5Q3 323 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PSAT1Q9Y617 370 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 A0A0A0MRY4 1105 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 A0A1B0GTW7 788 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TCRBV3S1A0A5B6 114 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SOBPA7XYQ1 873 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 C9IYK1 514 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 BOLA2-SMG1P6H3BVE0 249 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 M0QYV0 167 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 CILPO75339 1184 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 BAIAP3O94812 1187 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 VDRP11473 427 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ENO3P13929 434 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 DNAJB1P25685 340 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SLC7A1P30825 629 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TCF7P36402 384 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 GRIA1P42261 906 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 CD151P48509 253 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 NAA20P61599 178 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TMEM62Q0P6H9 643 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 BTG3Q14201 252 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TRIM25Q14258 630 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PTK2BQ14289 1009 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 DPYSL2Q16555 572 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF667Q5HYK9 610 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 IL23RQ5VWK5 629 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 HEATR6Q6AI08 1181 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 GRAMD4Q6IC98 578 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PPP4R4Q6NUP7 873 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 CASC4Q6P4E1 433 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF354CQ86Y25 554 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 CDAN1Q8IWY9 1227 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 COLGALT2Q8IYK4 626 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 CPXCR1Q8N123 301 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF513Q8N8E2 541 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ANKFN1Q8N957 763 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 MFSD2AQ8NA29 543 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 TMEM176AQ96HP8 235 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF512Q96ME7 567 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SPATA13Q96N96 652 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 PHF12Q96QT6 1004 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 WRNIP1Q96S55 665 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 HNRNPABQ99729 332 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 EFHD1Q9BUP0 239 aa9.88□□□□□ -0.83
SYNE1-230ENST00000495090 SNRNP25Q9BV90 132 aaKnown RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 GLIS2Q9BZE0 524 aaPredicted RBP9.88□□□□□ -0.83
SYNE1-230ENST00000495090 CAAP1Q9H8G2 361 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms