RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 SFXN1Q9H9B4 322 aa4.33□□□□□ -1.72
VPS50-219ENST00000495039 PNPLA8Q9NP80 782 aa4.33□□□□□ -1.72
VPS50-219ENST00000495039 LMTK3Q96Q04 1460 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 PRR23AA6NEV1 266 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 VSTM5A8MXK1 200 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 NPC1O15118 1278 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 VIPP01282 170 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 ZNF12P17014 697 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 SHC2P98077 582 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 DAG1Q14118 895 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 SLC39A14Q15043 492 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 DUSP6Q16828 381 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 HSP90AB2PQ58FF8 381 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 CEP85LQ5SZL2 805 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 LCE1FQ5T754 118 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 DSTYKQ6XUX3 929 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 Q6ZSV7 163 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 FJX1Q86VR8 437 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 FAM185AQ8N0U4 392 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 EXD3Q8N9H8 876 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 KDM1BQ8NB78 822 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 FAM216AQ8WUB2 273 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 IGSF21Q96ID5 467 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 C8orf48Q96LL4 319 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 POLDIP3Q9BY77 421 aaKnown RBP4.32□□□□□ -1.72
VPS50-219ENST00000495039 TXNRD2Q9NNW7 524 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 SNX13Q9Y5W8 968 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 SLC4A4Q9Y6R1 1079 aa4.32□□□□□ -1.72
VPS50-219ENST00000495039 GXYLT2A0PJZ3 443 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 SAC3D1A6NKF1 404 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 KIF3BO15066 747 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 F7P08709 466 aaPredicted RBP4.31□□□□□ -1.72
VPS50-219ENST00000495039 MYL4P12829 197 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 IDEP14735 1019 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 CHRNA5P30532 468 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 PMS2P54278 862 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 SLC5A9Q2M3M2 681 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 KIAA0408Q6ZU52 694 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 CHST15Q7LFX5 561 aaPredicted RBP4.31□□□□□ -1.72
VPS50-219ENST00000495039 ZNF367Q7RTV3 350 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 BICD2Q8TD16 824 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 TMED6Q8WW62 240 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 FIZ1Q96SL8 496 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 B3GNT4Q9C0J1 378 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 KCNK9Q9NPC2 374 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 PRDM11Q9NQV5 511 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 GEMIN8Q9NWZ8 242 aaKnown RBP4.31□□□□□ -1.72
VPS50-219ENST00000495039 OBP2AQ9NY56 170 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 DDX20Q9UHI6 824 aaKnown RBP4.31□□□□□ -1.72
VPS50-219ENST00000495039 CKAP5Q14008 2032 aa4.31□□□□□ -1.72
VPS50-219ENST00000495039 FRMPD2Q68DX3 1309 aaPredicted RBP4.3□□□□□ -1.72
VPS50-219ENST00000495039 SERPINB2P05120 415 aa4.3□□□□□ -1.72
VPS50-219ENST00000495039 ALDOCP09972 364 aaKnown RBP4.3□□□□□ -1.72
VPS50-219ENST00000495039 TNFSF8P32971 234 aa4.3□□□□□ -1.72
VPS50-219ENST00000495039 RBM39Q14498 530 aaKnown RBP4.3□□□□□ -1.72
VPS50-219ENST00000495039 SF3B4Q15427 424 aaKnown RBP eCLIP4.3□□□□□ -1.722e-7■■□□□ 14.3
VPS50-219ENST00000495039 RAP1GAP2Q684P5 730 aa4.3□□□□□ -1.72
VPS50-219ENST00000495039 IGFN1Q86VF2 1251 aa4.3□□□□□ -1.72
VPS50-219ENST00000495039 ATP11CQ8NB49 1132 aa4.3□□□□□ -1.72
VPS50-219ENST00000495039 APOLD1Q96LR9 279 aa4.3□□□□□ -1.72
VPS50-219ENST00000495039 ADAD1Q96M93 576 aaKnown RBP4.3□□□□□ -1.72
VPS50-219ENST00000495039 PCDHAC1Q9H158 963 aa4.3□□□□□ -1.72
VPS50-219ENST00000495039 ZMYND8Q9ULU4 1186 aaPredicted RBP4.3□□□□□ -1.72
VPS50-219ENST00000495039 MMP24Q9Y5R2 645 aa4.3□□□□□ -1.72
VPS50-219ENST00000495039 BMPR1BO00238 502 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 ASAP2O43150 1006 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 KCNJ13O60928 360 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 ALDOAP04075 364 aaKnown RBP4.29□□□□□ -1.72
VPS50-219ENST00000495039 IGFBP2P18065 325 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 ITGB8P26012 769 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 STAT1P42224 750 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 SEMA5AQ13591 1074 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 ARHGAP15Q53QZ3 475 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 ERAP2Q6P179 960 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 MSANTD2Q6P1R3 559 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 MEX3BQ6ZN04 569 aaKnown RBP4.29□□□□□ -1.72
VPS50-219ENST00000495039 TTC30AQ86WT1 665 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 TCP11L2Q8N4U5 519 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 IP6K1Q92551 441 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 SNX27Q96L92 541 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 PAAF1Q9BRP4 392 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 NUP62CLQ9H1M0 184 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 IGSF9Q9P2J2 1179 aa4.29□□□□□ -1.72
VPS50-219ENST00000495039 KCNJ18B7U540 433 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 DAOP14920 347 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 TUBA1BP68363 451 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 NSUN2Q08J23 767 aaKnown RBP eCLIP4.28□□□□□ -1.72
VPS50-219ENST00000495039 CSHL1Q14406 222 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 HNF4GQ14541 408 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 GBX1Q14549 363 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 GRM3Q14832 879 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 CCDC181Q5TID7 509 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 ADAM5Q6NVV9 412 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 ZNF449Q6P9G9 518 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 TMEM88Q6PEY1 159 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 CCDC25Q86WR0 208 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 DGKHQ86XP1 1220 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 DPP10Q8N608 796 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 PHKBQ93100 1093 aa4.28□□□□□ -1.72
VPS50-219ENST00000495039 PKP4Q99569 1192 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms