RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 TRUB2O95900 331 aaKnown RBP13.06□□□□□ -0.32
SKA1-205ENST00000494518 IL1BP01584 269 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 MZF1P28698 734 aaPredicted RBP13.06□□□□□ -0.32
SKA1-205ENST00000494518 GGCXP38435 758 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 METAP1P53582 386 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 PPP2CBP62714 309 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 RACK1P63244 317 aaKnown RBP13.06□□□□□ -0.32
SKA1-205ENST00000494518 PPP2CAP67775 309 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 NUCB2P80303 420 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 ECT2LQ008S8 904 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 GCNT1Q02742 428 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 PDAP1Q13442 181 aaKnown RBP13.06□□□□□ -0.32
SKA1-205ENST00000494518 POM121L1PQ3SYA9 428 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 LCE2DQ5TA82 110 aaPredicted RBP13.06□□□□□ -0.32
SKA1-205ENST00000494518 GJB7Q6PEY0 223 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 OR2T34Q8NGX1 318 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 CRELD1Q96HD1 420 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 FAM129BQ96TA1 746 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 GTPBP4Q9BZE4 634 aaKnown RBP13.06□□□□□ -0.32
SKA1-205ENST00000494518 IRX2Q9BZI1 471 aaPredicted RBP13.06□□□□□ -0.32
SKA1-205ENST00000494518 FAM204AQ9H8W3 233 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 UBE2TQ9NPD8 197 aaPredicted RBP13.06□□□□□ -0.32
SKA1-205ENST00000494518 SCML1Q9UN30 329 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 PTPRQQ9UMZ3 2332 aa13.06□□□□□ -0.32
SKA1-205ENST00000494518 TARSL2A2RTX5 802 aaKnown RBP13.05□□□□□ -0.32
SKA1-205ENST00000494518 F5H5T6 163 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 PMM2O15305 246 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 P4HA2O15460 535 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 GRAP2O75791 330 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 AFPP02771 609 aaKnown RBP13.05□□□□□ -0.32
SKA1-205ENST00000494518 ITGAVP06756 1048 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 SRPRAP08240 638 aaKnown RBP13.05□□□□□ -0.32
SKA1-205ENST00000494518 ABCB4P21439 1286 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 CD38P28907 300 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 GNA15P30679 374 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 MAT2AP31153 395 aaKnown RBP13.05□□□□□ -0.32
SKA1-205ENST00000494518 ADPRHP54922 357 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 APBA1Q02410 837 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 CENPCQ03188 943 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 NNTQ13423 1086 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 ACAP1Q15027 740 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 SHBQ15464 509 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 INAVAQ3KP66 663 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.05□□□□□ -0.32
SKA1-205ENST00000494518 SND1Q7KZF4 910 aaKnown RBP eCLIP13.05□□□□□ -0.32
SKA1-205ENST00000494518 PASD1Q8IV76 773 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 TRIM59Q8IWR1 403 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 CCAR2Q8N163 923 aaKnown RBP13.05□□□□□ -0.32
SKA1-205ENST00000494518 GALNT15Q8N3T1 639 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 EID2Q8N6I1 236 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 PTPRN2Q92932 1015 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 SERAC1Q96JX3 654 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 TIGD1Q96MW7 591 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 ELF4Q99607 663 aaPredicted RBP13.05□□□□□ -0.32
SKA1-205ENST00000494518 CRACR2AQ9BSW2 395 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 SLC4A5Q9BY07 1137 aa13.05□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3DA0A087WVF3 549 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3IA0A087WXS9 549 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3EA0A087X179 549 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3KA0A087X1G2 549 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 A0A1W2PR77 199 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 FAM170AA1A519 330 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3FA6NER0 549 aaPredicted RBP13.04□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3LB9A6J9 549 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 ENC1O14682 589 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 SART1O43290 800 aaKnown RBP13.04□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3HP0C7X1 549 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 GOT1P17174 413 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 USP8P40818 1118 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 ACADSBP45954 432 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 RPL34P49207 117 aaKnown RBP13.04□□□□□ -0.32
SKA1-205ENST00000494518 IRAK1P51617 712 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 SFSWAPQ12872 951 aaKnown RBP13.04□□□□□ -0.32
SKA1-205ENST00000494518 PDCLQ13371 301 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 CAMK2BQ13554 666 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 SMAD1Q15797 465 aaKnown RBP13.04□□□□□ -0.32
SKA1-205ENST00000494518 ARHGAP44Q17R89 818 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 SOWAHCQ53LP3 525 aaPredicted RBP13.04□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3GQ6DHY5 549 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3CQ6IPX1 549 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 CREBRFQ8IUR6 639 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 TBC1D3Q8IZP1 549 aaPredicted RBP13.04□□□□□ -0.32
SKA1-205ENST00000494518 ATP6V0D2Q8N8Y2 350 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 ZNF606Q8WXB4 792 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 RNF34Q969K3 372 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 CNDP2Q96KP4 475 aaKnown RBP13.04□□□□□ -0.32
SKA1-205ENST00000494518 BTN2A3PQ96KV6 586 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 SRRTQ9BXP5 876 aaKnown RBP13.04□□□□□ -0.32
SKA1-205ENST00000494518 POPDC2Q9HBU9 364 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 SCUBE2Q9NQ36 999 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 ADAMTS1Q9UHI8 967 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 FZD4Q9ULV1 537 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 CA5BQ9Y2D0 317 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.04□□□□□ -0.32
SKA1-205ENST00000494518 ITIH6Q6UXX5 1313 aa13.04□□□□□ -0.32
SKA1-205ENST00000494518 TRPM6Q9BX84 2022 aa13.03□□□□□ -0.32
SKA1-205ENST00000494518 BICDL2A1A5D9 508 aa13.03□□□□□ -0.32
SKA1-205ENST00000494518 MED7O43513 233 aa13.03□□□□□ -0.32
SKA1-205ENST00000494518 BNIP3LO60238 219 aa13.03□□□□□ -0.32
SKA1-205ENST00000494518 RTN2O75298 545 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms