RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 ZNF232Q9UNY5 417 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPM1 405 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TBKBP1A7MCY6 615 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GRK4P32298 578 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TUBP50607 506 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 KYAT1Q16773 422 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZCCHC23Q6ZST2 131 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 HFE2Q6ZVN8 426 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TMEM110Q86TL2 294 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CROCCP3Q8IVE0 287 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 WDTC1Q8N5D0 677 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TMCO5AQ8N6Q1 288 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZNF75CPQ92670 426 aaPredicted RBP10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CCDC28BQ9BUN5 200 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MPP6Q9NZW5 540 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CIDEBQ9UHD4 219 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 VANGL2Q9ULK5 521 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TRPV2Q9Y5S1 764 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 BTNL10A8MVZ5 291 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZBTB42B2RXF5 422 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TRUB2O95900 331 aaKnown RBP10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SOX11P35716 441 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 HDAC4P56524 1084 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TSTA3Q13630 321 aaPredicted RBP10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 POU6F1Q14863 301 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SYPL2Q5VXT5 272 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RASGEF1CQ8N431 466 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZFRQ96KR1 1074 aaKnown RBP10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RPRD1AQ96P16 312 aaPredicted RBP10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TUBGCP5Q96RT8 1024 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RRN3Q9NYV6 651 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 BFARQ9NZS9 450 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SELENONQ9NZV5 590 aa10.99□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 LAMB1P07942 1786 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TCRBV7S3A2A0A539 114 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DNALI1O14645 258 aaPredicted RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 USP1O94782 785 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ODC1P11926 461 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GPD2P43304 727 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 NAA20P61599 178 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ADRM1Q16186 407 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ANKS1BQ7Z6G8 1248 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CDKL3Q8IVW4 592 aaPredicted RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 COLGALT1Q8NBJ5 622 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TFB1MQ8WVM0 346 aaKnown RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 VCPIP1Q96JH7 1222 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 AGO3Q9H9G7 860 aaKnown RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PARVBQ9HBI1 364 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GSC2O15499 205 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CBFA2T3O75081 653 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TNFAIP8O95379 198 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PIRTP0C851 137 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TAC1P20366 129 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PMLP29590 882 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PNPLA4P41247 253 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GRIA1P42261 906 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZNF143P52747 638 aaPredicted RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SLC12A1Q13621 1099 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ITGA9Q13797 1035 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SYDE1Q6ZW31 735 aaPredicted RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 EFHBQ8N7U6 833 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SOCS4Q8WXH5 440 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ALKBH8Q96BT7 664 aaKnown RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CAPNS2Q96L46 248 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 DDX28Q9NUL7 540 aaKnown RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SLC17A6Q9P2U8 582 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RNF103-CHMP3A0A140T963 221 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 WDR27A2RRH5 827 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 H0YGN5 161 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 NEMP1O14524 444 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TBX10O75333 385 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZBTB48P10074 688 aaPredicted RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PPM1FP49593 454 aaPredicted RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MAXP61244 160 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CDC42EP1Q00587 391 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CCDC15Q0P6D6 951 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GRB14Q14449 540 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PRPSAP1Q14558 356 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 STILQ15468 1287 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 C16orf46Q6P387 395 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 RFWD3Q6PCD5 774 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TMCO2Q7Z6W1 182 aaPredicted RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SATL1Q86VE3 508 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CHSY1Q86X52 802 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CCDC117Q8IWD4 279 aaPredicted RBP10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 TRIB2Q92519 343 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 MYLPFQ96A32 169 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PRDM12Q9H4Q4 367 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SP110Q9HB58 689 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 CNGB3Q9NQW8 809 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 GRHL1Q9NZI5 618 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 WHRNQ9P202 907 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 PCDHB7Q9Y5E2 793 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 NFS1Q9Y697 457 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 WASF2Q9Y6W5 498 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 SBF2Q86WG5 1849 aa10.98□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ARL5CA6NH57 179 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 ZSCAN9O15535 394 aaPredicted RBP10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 FAM58BPP0C7Q3 252 aa10.97□□□□□ -0.65
MSH5-SAPCD1-207ENST00000493662 NPR3P17342 541 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms