RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 RAE1P78406 368 aaKnown RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 TXNL4AP83876 142 aaKnown RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 E2F1Q01094 437 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 CCDC15Q0P6D6 951 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 FRG1Q14331 258 aaKnown RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SLC18A3Q16572 532 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 GXYLT1Q4G148 440 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 RAB41Q5JT25 222 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 IL27RAQ6UWB1 636 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 Q6ZRM9 215 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 MFSD6Q6ZSS7 791 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 ENDOVQ8N8Q3 282 aaKnown RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 POC5Q8NA72 575 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 AVL9Q8NBF6 648 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 TP53I13Q8NBR0 393 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SRFBP1Q8NEF9 429 aaKnown RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 GPR150Q8NGU9 434 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 AFAP1L1Q8TED9 768 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 ZNF764Q96H86 408 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 POLR1BQ9H9Y6 1135 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 ARGLU1Q9NWB6 273 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 ADAM18Q9Y3Q7 739 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SMTNL1A8MU46 457 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 LDLRAD4O15165 306 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 TMPRSS11DO60235 418 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 CEP104O60308 925 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 OR2C1O95371 312 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 AFPP02771 609 aaKnown RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 C1SP09871 688 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 JAG1P78504 1218 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 CYP1B1Q16678 543 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 KYNUQ16719 465 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 KIAA1614Q5VZ46 1190 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SLFN13Q68D06 897 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 NAIF1Q69YI7 327 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 TCTN3Q6NUS6 607 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 TMEM88Q6PEY1 159 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 FAM83HQ6ZRV2 1179 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 DENND5BQ6ZUT9 1274 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SLC46A3Q7Z3Q1 461 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 RNF144BQ7Z419 303 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 GPR149Q86SP6 731 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 LINC00346Q8IVM7 164 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 BRSK2Q8IWQ3 736 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 CNPY4Q8N129 248 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SIRT6Q8N6T7 355 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 PNPLA1Q8N8W4 532 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 ZBTB8BQ8NAP8 495 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 LPIN2Q92539 896 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SAT2Q96F10 170 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 ABHD1Q96SE0 405 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SCPEP1Q9HB40 452 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 GALNT9Q9HCQ5 603 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 SLC35C2Q9NQQ7 365 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 ABCF3Q9NUQ8 709 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 CPSF2Q9P2I0 782 aaKnown RBP4.97□□□□□ -1.61
VPS13A-212ENST00000493341 HSPB7Q9UBY9 170 aa4.97□□□□□ -1.61
VPS13A-212ENST00000493341 NOBOXO60393 691 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 PRAMEF2O60811 474 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 TBX10O75333 385 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 RAD17O75943 681 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 NCR1O76036 304 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 SEC31AO94979 1220 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 TGDSO95455 350 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 GALTP07902 379 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 CHRM4P08173 479 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 HSP90AB1P08238 724 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 TGFB3P10600 412 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 MATN1P21941 496 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 MTNR1AP48039 350 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 AGTR2P50052 363 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 JAK3P52333 1124 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 VAV2P52735 878 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 MRPL12P52815 198 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 RRP1P56182 461 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 B4GALNT1Q00973 533 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 CEBPZQ03701 1054 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 ABHD18Q0P651 414 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 PPP2R5CQ13362 524 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 NT5DC1Q5TFE4 455 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 SHQ1Q6PI26 577 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 SLC39A5Q6ZMH5 540 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 SLFN11Q7Z7L1 901 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 Q8NFD4 153 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 GOT1L1Q8NHS2 421 aaPredicted RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 MYCBPAPQ8TBZ2 947 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 C2CD4CQ8TF44 421 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 VPS33AQ96AX1 596 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 FKBP10Q96AY3 582 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 ARHGEF3Q9NR81 526 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 RRP7BPQ9NSQ0 103 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 ATP8A2Q9NTI2 1148 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 SEL1LQ9UBV2 794 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 ZFR2Q9UPR6 939 aaKnown RBP4.96□□□□□ -1.62
VPS13A-212ENST00000493341 B3GNT3Q9Y2A9 372 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 XDHP47989 1333 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 AHRRA9YTQ3 701 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 CTDSP2O14595 271 aa4.96□□□□□ -1.62
VPS13A-212ENST00000493341 TP73O15350 636 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 129.3 ms