RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 SPATA2LQ8IUW3 424 aaPredicted RBP11.01□□□□□ -0.65
USP4-214ENST00000491791 TRIM42Q8IWZ5 723 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 CRIPAKQ8N1N5 446 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 TAB3Q8N5C8 712 aaPredicted RBP11.01□□□□□ -0.65
USP4-214ENST00000491791 PDCD7Q8N8D1 485 aaKnown RBP11.01□□□□□ -0.65
USP4-214ENST00000491791 CFAP36Q96G28 342 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 GORASP1Q9BQQ3 440 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 TKTL2Q9H0I9 626 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 STARD7Q9NQZ5 370 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 TMPRSS4Q9NRS4 437 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 TMEM39AQ9NV64 488 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 TBC1D13Q9NVG8 400 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 PLLPQ9Y342 182 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 USH1CQ9Y6N9 552 aa11.01□□□□□ -0.65
USP4-214ENST00000491791 FNDC1Q4ZHG4 1894 aaPredicted RBP11.01□□□□□ -0.65
USP4-214ENST00000491791 FAM237BA0A1B0GVD1 139 aa11□□□□□ -0.65
USP4-214ENST00000491791 OR6C75A6NL08 312 aa11□□□□□ -0.65
USP4-214ENST00000491791 C2CD2LO14523 706 aa11□□□□□ -0.65
USP4-214ENST00000491791 KIAA0355O15063 1070 aa11□□□□□ -0.65
USP4-214ENST00000491791 TBC1D4O60343 1298 aa11□□□□□ -0.65
USP4-214ENST00000491791 ATP5HO75947 161 aa11□□□□□ -0.65
USP4-214ENST00000491791 DDHD2O94830 711 aa11□□□□□ -0.65
USP4-214ENST00000491791 CSH1P0DML2 217 aa11□□□□□ -0.65
USP4-214ENST00000491791 CSH2P0DML3 217 aa11□□□□□ -0.65
USP4-214ENST00000491791 SLC2A3P11169 496 aa11□□□□□ -0.65
USP4-214ENST00000491791 CCNB1P14635 433 aa11□□□□□ -0.65
USP4-214ENST00000491791 SELPP16109 830 aa11□□□□□ -0.65
USP4-214ENST00000491791 ADRA1DP25100 572 aa11□□□□□ -0.65
USP4-214ENST00000491791 PSMB4P28070 264 aa11□□□□□ -0.65
USP4-214ENST00000491791 CCR1P32246 355 aa11□□□□□ -0.65
USP4-214ENST00000491791 CD68P34810 354 aaPredicted RBP11□□□□□ -0.65
USP4-214ENST00000491791 GRIA1P42261 906 aa11□□□□□ -0.65
USP4-214ENST00000491791 MAGEA12P43365 314 aa11□□□□□ -0.65
USP4-214ENST00000491791 CRYMQ14894 314 aa11□□□□□ -0.65
USP4-214ENST00000491791 SPRED3Q2MJR0 410 aa11□□□□□ -0.65
USP4-214ENST00000491791 MPP5Q8N3R9 675 aa11□□□□□ -0.65
USP4-214ENST00000491791 NPWQ8N729 165 aa11□□□□□ -0.65
USP4-214ENST00000491791 PPM1NQ8N819 430 aa11□□□□□ -0.65
USP4-214ENST00000491791 CDKL2Q92772 493 aa11□□□□□ -0.65
USP4-214ENST00000491791 SLC39A13Q96H72 371 aa11□□□□□ -0.65
USP4-214ENST00000491791 TOX2Q96NM4 488 aa11□□□□□ -0.65
USP4-214ENST00000491791 IL12RB2Q99665 862 aa11□□□□□ -0.65
USP4-214ENST00000491791 RHOBTB2Q9BYZ6 727 aa11□□□□□ -0.65
USP4-214ENST00000491791 FBXO44Q9H4M3 255 aa11□□□□□ -0.65
USP4-214ENST00000491791 RETREG1Q9H6L5 497 aa11□□□□□ -0.65
USP4-214ENST00000491791 MANSC1Q9H8J5 431 aa11□□□□□ -0.65
USP4-214ENST00000491791 LRRC40Q9H9A6 602 aa11□□□□□ -0.65
USP4-214ENST00000491791 MLXIPLQ9NP71 852 aa11□□□□□ -0.65
USP4-214ENST00000491791 DONSONQ9NYP3 566 aa11□□□□□ -0.65
USP4-214ENST00000491791 CLIC5Q9NZA1 410 aa11□□□□□ -0.65
USP4-214ENST00000491791 SIRPGQ9P1W8 387 aa11□□□□□ -0.65
USP4-214ENST00000491791 ADAM28Q9UKQ2 775 aa11□□□□□ -0.65
USP4-214ENST00000491791 CAPN7Q9Y6W3 813 aa11□□□□□ -0.65
USP4-214ENST00000491791 PITPNM1O00562 1244 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 COPEO14579 308 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 B4GALT3O60512 393 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 DCTN3O75935 186 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 USP1O94782 785 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 ATP5BP06576 529 aaKnown RBP10.99□□□□□ -0.65
USP4-214ENST00000491791 POLBP06746 335 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 PYGBP11216 843 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 FGFR3P22607 806 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 DNAJB1P25685 340 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 ALDH3A1P30838 453 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 SERPINB4P48594 390 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 PSEN1P49768 467 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 SLC5A3P53794 718 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 MLLT6P55198 1093 aaPredicted RBP10.99□□□□□ -0.65
USP4-214ENST00000491791 PPARDQ03181 441 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 MGAT5Q09328 741 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 RIPK1Q13546 671 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 INSCQ1MX18 579 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 TTC31Q49AM3 519 aaPredicted RBP10.99□□□□□ -0.65
USP4-214ENST00000491791 PLEKHG4Q58EX7 1191 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 BTBD8Q5XKL5 378 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 FAM91A1Q658Y4 838 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 TRMT10BQ6PF06 316 aaKnown RBP10.99□□□□□ -0.65
USP4-214ENST00000491791 KYAT3Q6YP21 454 aaKnown RBP10.99□□□□□ -0.65
USP4-214ENST00000491791 OTOAQ7RTW8 1153 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 PID1Q7Z2X4 250 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 LINC00523Q86TU6 105 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 ZNF280BQ86YH2 543 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 ARHGAP12Q8IWW6 846 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 FITM2Q8N6M3 262 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 CCNYQ8ND76 341 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 C2orf15Q8WU43 125 aaKnown RBP10.99□□□□□ -0.65
USP4-214ENST00000491791 C10orf82Q8WW14 230 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 MYLIPQ8WY64 445 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 EDEM1Q92611 657 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 SPATA17Q96L03 361 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 C7orf26Q96N11 449 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 SERPINB11Q96P15 392 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 FCRL5Q96RD9 977 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 SRPK1Q96SB4 655 aaKnown RBP10.99□□□□□ -0.65
USP4-214ENST00000491791 TMEM209Q96SK2 561 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 TMEM175Q9BSA9 504 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 MCMBPQ9BTE3 642 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 TRPV6Q9H1D0 765 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 CATSPERBQ9H7T0 1116 aa10.99□□□□□ -0.65
USP4-214ENST00000491791 ABCF3Q9NUQ8 709 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms