RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SMARCB1Q12824 385 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 CAMK1Q14012 370 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 RAB33AQ14088 237 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 BRMS1LQ5PSV4 323 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 FAXCQ5TGI0 409 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 CCDC91Q7Z6B0 441 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 NPWQ8N729 165 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 POF1BQ8WVV4 589 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 FBXO32Q969P5 355 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 FBXO44Q9H4M3 255 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 PRDM12Q9H4Q4 367 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 OR12D3Q9UGF7 316 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 CLUHO75153 1309 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 PLXNA4Q9HCM2 1894 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 MYO9BQ13459 2157 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 SLC38A8A6NNN8 435 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 GRM6O15303 877 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 TGM5O43548 720 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 RPSAP08865 295 aaKnown RBP12.48□□□□□ -0.41
HDAC6-230ENST00000488543 FOXN2P32314 431 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 IRS1P35568 1242 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 ZNF135P52742 658 aaPredicted RBP12.48□□□□□ -0.41
HDAC6-230ENST00000488543 GPX6P59796 221 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 NCALDP61601 193 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 MGAT5Q09328 741 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 PLPP4Q5VZY2 271 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 BZW1Q7L1Q6 419 aaKnown RBP12.48□□□□□ -0.41
HDAC6-230ENST00000488543 CROCCP2Q86T23 111 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 ANKMY2Q8IV38 441 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 ZBED8Q8IZ13 594 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 C2orf15Q8WU43 125 aaKnown RBP12.48□□□□□ -0.41
HDAC6-230ENST00000488543 HTR3CQ8WXA8 447 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 SPATA17Q96L03 361 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 TTC25Q96NG3 672 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 TGS1Q96RS0 853 aaKnown RBP12.48□□□□□ -0.41
HDAC6-230ENST00000488543 ECT2Q9H8V3 914 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 ETNK1Q9HBU6 452 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 NOD2Q9HC29 1040 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 STK38LQ9Y2H1 464 aa12.48□□□□□ -0.41
HDAC6-230ENST00000488543 YBX2Q9Y2T7 364 aaKnown RBP12.48□□□□□ -0.41
HDAC6-230ENST00000488543 NUP205Q92621 2012 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 KCNU1A8MYU2 1149 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 PRRG1O14668 218 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 OAS1P00973 400 aaKnown RBP12.47□□□□□ -0.41
HDAC6-230ENST00000488543 TUFMP49411 452 aaKnown RBP12.47□□□□□ -0.41
HDAC6-230ENST00000488543 RPL10AP62906 217 aaKnown RBP12.47□□□□□ -0.41
HDAC6-230ENST00000488543 ITIH4Q14624 930 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 PPP2R5DQ14738 602 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 PDK1Q15118 436 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 SYCP2LQ5T4T6 812 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 MANEALQ5VSG8 457 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 HEATR6Q6AI08 1181 aaKnown RBP12.47□□□□□ -0.41
HDAC6-230ENST00000488543 C4orf22Q6V702 233 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 AGGF1Q8N302 714 aaeCLIP12.47□□□□□ -0.41
HDAC6-230ENST00000488543 MICAL1Q8TDZ2 1067 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 RNF34Q969K3 372 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 HAPLN3Q96S86 360 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 EPAS1Q99814 870 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 KLC2Q9H0B6 622 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 ENTPD7Q9NQZ7 604 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 EURLQ9NYK6 297 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 USP15Q9Y4E8 981 aaPredicted RBP12.47□□□□□ -0.41
HDAC6-230ENST00000488543 SHROOM3Q8TF72 1996 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 A0A0A0MRY4 1105 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 POC1B-GALNT4F8VUJ3 575 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 MGRN1O60291 552 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 PAGE1O75459 146 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 WASHC5Q12768 1159 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 TPGS2Q68CL5 300 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 ARHGAP18Q8N392 663 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 FITM2Q8N6M3 262 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 STAMBPL1Q96FJ0 436 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 P2RY11Q96G91 374 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 SLC39A13Q96H72 371 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 SPATA13Q96N96 652 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 SERPINB12Q96P63 405 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 CCDC134Q9H6E4 229 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 RXFP1Q9HBX9 757 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 YIPF1Q9Y548 306 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 RAD54BQ9Y620 910 aa12.47□□□□□ -0.41
HDAC6-230ENST00000488543 RTN3O95197 1032 aaPredicted RBP12.46□□□□□ -0.41
HDAC6-230ENST00000488543 HMGA1P17096 107 aaKnown RBP12.46□□□□□ -0.41
HDAC6-230ENST00000488543 GCAP28676 217 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 HOXC13P31276 330 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 CCR1P32246 355 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 STX2P32856 288 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 TWF1Q12792 350 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 STAT4Q14765 748 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 PREPLQ4J6C6 727 aaPredicted RBP12.46□□□□□ -0.41
HDAC6-230ENST00000488543 ANKRD20A2Q5SQ80 823 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 ANKRD20A1Q5TYW2 823 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 ANKRD20A3Q5VUR7 823 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 IGDCC3Q8IVU1 814 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 C4orf33Q8N1A6 199 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 FCRL2Q96LA5 508 aaPredicted RBP12.46□□□□□ -0.41
HDAC6-230ENST00000488543 UBE2OQ9C0C9 1292 aaKnown RBP12.46□□□□□ -0.41
HDAC6-230ENST00000488543 NSRP1Q9H0G5 558 aaKnown RBP12.46□□□□□ -0.41
HDAC6-230ENST00000488543 STMN4Q9H169 189 aaPredicted RBP12.46□□□□□ -0.41
HDAC6-230ENST00000488543 CCSER2Q9H7U1 834 aa12.46□□□□□ -0.41
HDAC6-230ENST00000488543 FNIP2Q9P278 1114 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms