RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	SLITRK1	Q96PX8	696 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	C2orf49	Q9BVC5	232 aa	Predicted RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520	TTLL2	Q9BWV7	592 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	DUSP16	Q9BY84	665 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	SLC6A17	Q9H1V8	727 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	LRRC4	Q9HBW1	653 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	CAPN10	Q9HC96	672 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	DMAP1	Q9NPF5	467 aa	Predicted RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520	TMEM30A	Q9NV96	361 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	CHORDC1	Q9UHD1	332 aa	Predicted RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520	HCN2	Q9UL51	889 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	CYP8B1	Q9UNU6	501 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	CNTN6	Q9UQ52	1028 aa		9.11	□□□□□ -0.95
USP4-213	ENST00000488520	SETX	Q7Z333	2677 aa	Known RBP	9.11	□□□□□ -0.95
USP4-213	ENST00000488520		A0A0A0MRY4	1105 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	IGHV1OR15-9	A0A0B4J2B8	117 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	LRRC53	A6NM62	1247 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	UPK3BL1	B0FP48	263 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	PALM2-AKAP2	B1ALY0	433 aa	Predicted RBP	9.1	□□□□□ -0.95
USP4-213	ENST00000488520	UPK3BL2	E5RIL1	263 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520		M0QYV0	167 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	EFS	O43281	561 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	NRDC	O43847	1150 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	TULP3	O75386	442 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	RTN3	O95197	1032 aa	Predicted RBP	9.1	□□□□□ -0.95
USP4-213	ENST00000488520	OLFM2	O95897	454 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	CAPNS1	P04632	268 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	SYP	P08247	313 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	FTH1P19	P0C7X4	201 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	ARAF	P10398	606 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	CD33	P20138	364 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	BRD2	P25440	801 aa	Known RBP	9.1	□□□□□ -0.95
USP4-213	ENST00000488520	MAOB	P27338	520 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	EIF2D	P41214	584 aa	Known RBP	9.1	□□□□□ -0.95
USP4-213	ENST00000488520	BCAT1	P54687	386 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	GAD2	Q05329	585 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	BST2	Q10589	180 aa	Known RBP	9.1	□□□□□ -0.95
USP4-213	ENST00000488520	ZNF423	Q2M1K9	1284 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	GOLGA7B	Q2TAP0	167 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	SOWAHC	Q53LP3	525 aa	Predicted RBP	9.1	□□□□□ -0.95
USP4-213	ENST00000488520	TAF3	Q5VWG9	929 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	EGFLAM	Q63HQ2	1017 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	LCLAT1	Q6UWP7	414 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	SLCO4C1	Q6ZQN7	724 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	SLC47A2	Q86VL8	602 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	TMEM25	Q86YD3	366 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	BBS7	Q8IWZ6	715 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	NUP93	Q8N1F7	819 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	UBR7	Q8N806	425 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	TMEM35B	Q8NCS4	154 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	UBA3	Q8TBC4	463 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	MDM1	Q8TC05	714 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	SYN2	Q92777	582 aa	Predicted RBP	9.1	□□□□□ -0.95
USP4-213	ENST00000488520	FBXO32	Q969P5	355 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	WBP2	Q969T9	261 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	C8orf48	Q96LL4	319 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	CEP295NL	Q96MC4	621 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	TWNK	Q96RR1	684 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	ACOX2	Q99424	681 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	HNRNPUL1	Q9BUJ2	856 aa	Known RBP eCLIP	9.1	□□□□□ -0.95
USP4-213	ENST00000488520	UBXN6	Q9BZV1	441 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	ZNF518B	Q9C0D4	1074 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	MIS12	Q9H081	205 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	DEF6	Q9H4E7	631 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	FBXO44	Q9H4M3	255 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	SYNC	Q9H7C4	482 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	CCSER2	Q9H7U1	834 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	COMMD8	Q9NX08	183 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	AIPL1	Q9NZN9	384 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	MARK1	Q9P0L2	795 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	TBC1D14	Q9P2M4	693 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	IMPACT	Q9P2X3	320 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	DEC1	Q9P2X7	70 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	HMGXB4	Q9UGU5	601 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	TSPAN16	Q9UKR8	245 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	SH3BP1	Q9Y3L3	701 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	RAD54B	Q9Y620	910 aa		9.1	□□□□□ -0.95
USP4-213	ENST00000488520	SMG1	Q96Q15	3661 aa	Known RBP	9.1	□□□□□ -0.95
USP4-213	ENST00000488520	MUC22	E2RYF6	1773 aa	Predicted RBP	9.09	□□□□□ -0.95
USP4-213	ENST00000488520		A0A1W2PQF6	199 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	E2F8	A0AVK6	867 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	FAM221B	A6H8Z2	402 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	COCH	O43405	550 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	NDUFS2	O75306	463 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	SERPING1	P05155	500 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	SETSIP	P0DME0	302 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	CYP11B1	P15538	503 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	YWHAQ	P27348	245 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	CDC25B	P30305	580 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	NTSR1	P30989	418 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	HOXD12	P35452	270 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	PBX1	P40424	430 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	ACADSB	P45954	432 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	PPP3CC	P48454	512 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	GSK3A	P49840	483 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	JAM2	P57087	298 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	TDRD12	Q587J7	1177 aa	Known RBP	9.09	□□□□□ -0.95
USP4-213	ENST00000488520	PPP1R2P3	Q6NXS1	205 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	TRIM72	Q6ZMU5	477 aa		9.09	□□□□□ -0.95
USP4-213	ENST00000488520	TRMT11	Q7Z4G4	463 aa	Known RBP	9.09	□□□□□ -0.95

Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms