RNA–Protein interactions for RNA: ENST00000486741.5

HMGN1-216, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 4,299 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-216ENST00000486741 LRIG2O94898 1065 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 LMNAP02545 664 aaKnown RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CDC25CP30307 473 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 L1CAMP32004 1257 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SLC11A2P49281 568 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 NAGLUP54802 743 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SOX4Q06945 474 aaPredicted RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 TUSC3Q13454 348 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 FAM83EQ2M2I3 478 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 NOMO2Q5JPE7 1267 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 OLFML1Q6UWY5 402 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 ECHDC2Q86YB7 292 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CARNMT1Q8N4J0 409 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SLC35F5Q8WV83 523 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SLC44A1Q8WWI5 657 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SERAC1Q96JX3 654 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 TMEM109Q9BVC6 243 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 GPR63Q9BZJ6 419 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 PTPRHQ9HD43 1115 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CHRAC1Q9NRG0 131 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 ATP11BQ9Y2G3 1177 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 GIT1Q9Y2X7 761 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SUPT3HB4E1H0 165 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 PAGE1O75459 146 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SUPT3HO75486 399 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 ZMPSTE24O75844 475 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 PTPN7P35236 360 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 RNF219Q5W0B1 726 aaPredicted RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 NIPA2Q8N8Q9 360 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SEPT8Q92599 483 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SERPINB11Q96P15 392 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 NDNQ99608 321 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 HNRNPABQ99729 332 aaKnown RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SLC30A1Q9Y6M5 507 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 A8MX80 341 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 DCXO43602 365 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 DNAJC6O75061 913 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 KLHL2O95198 593 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 ITGA2BP08514 1039 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 MBL2P11226 248 aaPredicted RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 COPAP53621 1224 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 PLIN5Q00G26 463 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 IL1RL1Q01638 556 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 POLD3Q15054 466 aaPredicted RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 PCBP1Q15365 356 aaKnown RBP eCLIP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CNGA3Q16281 694 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 FAM187BQ17R55 369 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 GDF6Q6KF10 455 aaPredicted RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 ZNF567Q8N184 647 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CFAP52Q8N1V2 620 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CALML6Q8TD86 181 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 LATS2Q9NRM7 1088 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 PIGVQ9NUD9 493 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 RRN3Q9NYV6 651 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 PCDHA11Q9Y5I1 949 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 ECM29Q5VYK3 1845 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 A8MUI8 341 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 MT-CYBP00156 380 aaPredicted RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 F2P00734 622 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 KRT16P08779 473 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 PTPN4P29074 926 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CD86P42081 329 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 MPP2Q14168 576 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CRYMQ14894 314 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 PSMD5Q16401 504 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 RBBP7Q16576 425 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 TIGD7Q6NT04 549 aaPredicted RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 DRICH1Q6PGQ1 229 aaPredicted RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CLEC20AQ6ZU45 233 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 TMEM110Q86TL2 294 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 ALYREFQ86V81 257 aaKnown RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 EFCAB3Q8N7B9 438 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 NAT8LQ8N9F0 302 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 DQX1Q8TE96 717 aaKnown RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SLC4A5Q9BY07 1137 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SENP6Q9GZR1 1112 aaPredicted RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 ZCWPW1Q9H0M4 648 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 TRPV6Q9H1D0 765 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 FBXO44Q9H4M3 255 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 TLR8Q9NR97 1041 aaKnown RBP13.5□□□□□ -0.25
HMGN1-216ENST00000486741 SCOCQ9UIL1 159 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 TRHDEQ9UKU6 1024 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 STARD13Q9Y3M8 1113 aa13.5□□□□□ -0.25
HMGN1-216ENST00000486741 CCL22O00626 93 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 NRP1O14786 923 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 STX7O15400 261 aaKnown RBP13.49□□□□□ -0.25
HMGN1-216ENST00000486741 RENBPP51606 427 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 POLE2P56282 527 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 GPX6P59796 221 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 CDH18Q13634 790 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 YTHDF3Q7Z739 585 aaKnown RBP13.49□□□□□ -0.25
HMGN1-216ENST00000486741 TBL1YQ9BQ87 522 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 DNAJC25-GNG10A0A024R161 153 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 A0A1W2PQH9 124 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 ERI2A8K979 691 aaKnown RBP13.49□□□□□ -0.25
HMGN1-216ENST00000486741 PTPN9P43378 593 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 LDLRAD1Q5T700 205 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 ARHGAP18Q8N392 663 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 SLCO2A1Q92959 643 aa13.49□□□□□ -0.25
HMGN1-216ENST00000486741 ULK4Q96C45 1275 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms