RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CNTFP26441 200 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 PTPN7P35236 360 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 GP5P40197 560 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 RGS4P49798 205 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 CRADDP78560 199 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 SLC10A6Q3KNW5 377 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 MFSD5Q6N075 450 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 ZNF516Q92618 1163 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 APOL5Q9BWW9 433 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 ING2Q9H160 280 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 ABCC13Q9NSE7 274 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 MARCH2Q9P0N8 246 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 ARHGAP26Q9UNA1 814 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 DNAJC16Q9Y2G8 782 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 ORC6Q9Y5N6 252 aa11.25□□□□□ -0.61
HDAC6-228ENST00000486227 ANGPT2O15123 496 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 MAP3K13O43283 966 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SRP72O76094 671 aaKnown RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 PSMB4P28070 264 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 ATXN3P54252 364 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SETD3Q86TU7 594 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 GALNT4Q8N4A0 578 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 MPP4Q96JB8 637 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 NR1H4Q96RI1 486 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 BRD8Q9H0E9 1235 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 FZD8Q9H461 694 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SLC28A3Q9HAS3 691 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 ZNF112Q9UJU3 913 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 GIT1Q9Y2X7 761 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 NR2E1Q9Y466 385 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 A0A0A0MRY4 1105 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SEPT4O43236 478 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 VAPBO95292 243 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 RPL9P32969 192 aaKnown RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 MATKP42679 507 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 AQP5P55064 265 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 CREMQ03060 361 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 CAPRIN1Q14444 709 aaKnown RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SDHAF4Q5VUM1 108 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 RETSATQ6NUM9 610 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 PIGWQ7Z7B1 504 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 USP6NLQ92738 828 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SPATA13Q96N96 652 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SLC12A4Q9UP95 1085 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 DERAQ9Y315 318 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 KDM1AO60341 852 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SERPINF2P08697 491 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 RHOAP61586 193 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 CDK16Q00536 496 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 FSTL1Q12841 308 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SPDYAQ5MJ70 313 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 C6orf10Q5SRN2 563 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 N4BP2L1Q5TBK1 243 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 C6orf89Q6UWU4 347 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 FAM35AQ86V20 835 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 XYLT1Q86Y38 959 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SRPK1Q96SB4 655 aaKnown RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 LGMNQ99538 433 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 TMEM109Q9BVC6 243 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 DUSP16Q9BY84 665 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 NEUROG2Q9H2A3 272 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 FBXL21Q9UKT6 434 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 ADGRA2Q96PE1 1338 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 MAGEB16A2A368 324 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 LRCH4O75427 683 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 PARNO95453 639 aaKnown RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 ASGR1P07306 291 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 FESP07332 822 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 PAX3P23760 479 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 ADRA1DP25100 572 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 NOVP48745 357 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 MRPS5P82675 430 aaKnown RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 ADCK2Q7Z695 626 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 IFNEQ86WN2 208 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 LGI2Q8N0V4 545 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SLC4A11Q8NBS3 891 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 OXNAD1Q96HP4 312 aaPredicted RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 ZNF670Q9BS34 389 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 MRPL1Q9BYD6 325 aaKnown RBP11.24□□□□□ -0.61
HDAC6-228ENST00000486227 EBF2Q9HAK2 575 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 SCUBE2Q9NQ36 999 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 TBC1D13Q9NVG8 400 aa11.24□□□□□ -0.61
HDAC6-228ENST00000486227 VNN1O95497 513 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ERCC2P18074 760 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 PGAM1P18669 254 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 IFNA8P32881 189 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 FLOT2Q14254 428 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 CSHL1Q14406 222 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 KCNMB4Q86W47 210 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 TMEM192Q8IY95 271 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 TOP6BLQ8N6T0 577 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 FAM13CQ8NE31 585 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 CNBD2Q96M20 576 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 GPAMQ9HCL2 828 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ATP13A1Q9HD20 1204 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 TRMT6Q9UJA5 497 aaKnown RBP11.23□□□□□ -0.61
HDAC6-228ENST00000486227 PKD1L3Q7Z443 1732 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ADH1AP07327 375 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 ABCG1P45844 678 aa11.23□□□□□ -0.61
HDAC6-228ENST00000486227 PTK2BQ14289 1009 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms