RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 TPI1P60174 286 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 RPS24P62847 133 aaKnown RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 SLC12A1Q13621 1099 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 KRT81Q14533 505 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 OCLNQ16625 522 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 C15orf59Q2T9L4 293 aaPredicted RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 ZNF528Q3MIS6 628 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 TTC31Q49AM3 519 aaPredicted RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 FYB2Q5VWT5 728 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 MBLAC2Q68D91 279 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 WDR59Q6PJI9 974 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 H2AFVQ71UI9 128 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 MON1BQ7L1V2 547 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 ARCQ7LC44 396 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 STRADAQ7RTN6 431 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 IRF2BP2Q7Z5L9 587 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 TFAP2DQ7Z6R9 452 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 DSG4Q86SJ6 1040 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 CCAR2Q8N163 923 aaKnown RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 PRSS33Q8NF86 280 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 USP33Q8TEY7 942 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 PRCCQ92733 491 aaPredicted RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 TBC1D31Q96DN5 1066 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 PCDHB18PQ96TA0 734 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 NPY6RQ99463 290 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 CNPY3Q9BT09 278 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 SPON2Q9BUD6 331 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 C2orf49Q9BVC5 232 aaPredicted RBP8.28□□□□□ -1.08
USP40-216ENST00000485943 ZYG11BQ9C0D3 744 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 DYRK4Q9NR20 520 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 TMPRSS4Q9NRS4 437 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 ABHD10Q9NUJ1 306 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 ELOVL2Q9NXB9 296 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 CACNA2D2Q9NY47 1150 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 IP6K2Q9UHH9 426 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 RAPGEFL1Q9UHV5 662 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 ANAPC7Q9UJX3 599 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 NCKAP1Q9Y2A7 1128 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 R4GN57 208 aa8.28□□□□□ -1.08
USP40-216ENST00000485943 TMEM110-MUSTN1A8MSY1 372 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 E9PAM4 449 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 K7EQS6 105 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 GFRA2O00451 464 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 CCP110O43303 1012 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 GFRA3O60609 400 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 LILRA1O75019 489 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 ZNF217O75362 1048 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 RHOBTB1O94844 696 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 PENKP01210 267 aaPredicted RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 IGLV3-27P01718 113 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 LMNAP02545 664 aaKnown RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 DNTTP04053 509 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 FYNP06241 537 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 DLDP09622 509 aaKnown RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 HOXD9P28356 352 aaPredicted RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 EPHB2P29323 1055 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 RFC1P35251 1148 aaPredicted RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 PTPN9P43378 593 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 CXCR3P49682 368 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 ZNF143P52747 638 aaPredicted RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 AIF1P55008 147 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 GEMIN4P57678 1058 aaKnown RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 ECT2LQ008S8 904 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 NHLH1Q02575 133 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 CCDC15Q0P6D6 951 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 AUHQ13825 339 aaKnown RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 PIGHQ14442 188 aaPredicted RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 CRY1Q16526 586 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 PPP6R3Q5H9R7 873 aaPredicted RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 TMCO4Q5TGY1 634 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 EMC10Q5UCC4 262 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 EGFLAMQ63HQ2 1017 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 NAIF1Q69YI7 327 aaPredicted RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 RETSATQ6NUM9 610 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 SARM1Q6SZW1 724 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 KIAA1328Q86T90 577 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 CACUL1Q86Y37 369 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 ETFBKMTQ8IXQ9 262 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 RYBPQ8N488 228 aaPredicted RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 ATP11CQ8NB49 1132 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 SPC24Q8NBT2 197 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 JOSD2Q8TAC2 188 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 CYB5D2Q8WUJ1 264 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 NSMCE1Q8WV22 266 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 PGAP3Q96FM1 320 aaPredicted RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 SLC39A13Q96H72 371 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 MRGPRX2Q96LB1 330 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 HAPLN3Q96S86 360 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 NUP85Q9BW27 656 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 TPSD1Q9BZJ3 242 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 RBSNQ9H1K0 784 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 DHX35Q9H5Z1 703 aaKnown RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 ZWILCHQ9H900 591 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 FBRSL1Q9HCM7 1045 aaKnown RBP8.27□□□□□ -1.09
USP40-216ENST00000485943 ZDHHC4Q9NPG8 344 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 HAUS2Q9NVX0 235 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 TAS2R14Q9NYV8 317 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 OR12D3Q9UGF7 316 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 PCSK1NQ9UHG2 260 aa8.27□□□□□ -1.09
USP40-216ENST00000485943 SLC27A6Q9Y2P4 619 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms