RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 ANGEL2Q5VTE6 544 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 KLHDC10Q6PID8 442 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 TDRPQ86YL5 185 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 DHRSXQ8N5I4 330 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 NAT16Q8N8M0 369 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 ENDOVQ8N8Q3 282 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 DNAJB14Q8TBM8 379 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 TFAP2BQ92481 460 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 P2RX7Q99572 595 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 GPR88Q9GZN0 384 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 AFF4Q9UHB7 1163 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 NOD1Q9Y239 953 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 MYPNQ86TC9 1320 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 C16orf96A6NNT2 1141 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 MAGEB3O15480 346 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 TBC1D4O60343 1298 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 MAPTP10636 758 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 LRRC38Q5VT99 294 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 ZNF280CQ8ND82 737 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 PPHLN1Q8NEY8 458 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 FAM167AQ96KS9 214 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 ZBTB18Q99592 522 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 MRPS26Q9BYN8 205 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 ROGDIQ9GZN7 287 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 SNX15Q9NRS6 342 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 KIF17Q9P2E2 1029 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 SUPT3HB4E1H0 165 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 CHADO15335 359 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 HDAC3O15379 428 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 TRUB2O95900 331 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 DLDP09622 509 aaKnown RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 STAG3L1P0CL83 205 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 VDRP11473 427 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 KCNK10P57789 538 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 PACS1Q6VY07 963 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 FRMD7Q6ZUT3 714 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 ZFYVE19Q96K21 471 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 FRMD8P1Q9BZ68 369 aaPredicted RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.78□□□□□ -0.2
USP42-206ENST00000479544 DMTF1Q9Y222 760 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 SH3GLB1Q9Y371 365 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 CFAP99D6REC4 459 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 TYROBPO43914 113 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 TCEA3O75764 348 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 MFN2O95140 757 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 CCNE2O96020 404 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 PSMB9P28065 219 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 ARHGDIAP52565 204 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 CDH13P55290 713 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 MXD4Q14582 209 aaPredicted RBP13.78□□□□□ -0.2
USP42-206ENST00000479544 SCIMPQ6UWF3 145 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 SHCBP1Q8NEM2 672 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 BPIFB6Q8NFQ5 453 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 PLGRKTQ9HBL7 147 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 GPAMQ9HCL2 828 aa13.78□□□□□ -0.2
USP42-206ENST00000479544 COL1A1P02452 1464 aaPredicted RBP13.77□□□□□ -0.2
USP42-206ENST00000479544 IQCA1LA6NCM1 817 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 PSMD12O00232 456 aaPredicted RBP13.77□□□□□ -0.2
USP42-206ENST00000479544 TGDSO95455 350 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 CRTAMO95727 393 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 APOA1P02647 267 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 VTNP04004 478 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 SUPT20HL2P0C7V6 817 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 XRCC1P18887 633 aaPredicted RBP13.77□□□□□ -0.2
USP42-206ENST00000479544 ACO1P21399 889 aaKnown RBP13.77□□□□□ -0.2
USP42-206ENST00000479544 IVDP26440 423 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 KLRC2P26717 231 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 SLC7A2P52569 658 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 TNFAIP2Q03169 654 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 CTBP1Q13363 440 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 IMPG1Q17R60 797 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 SUPT20HL1Q3ZLR7 823 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 FRA10AC1Q70Z53 315 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 WDR49Q8IV35 697 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 URGCPQ8TCY9 931 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 DCAKDQ8WVC6 231 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 C7orf26Q96N11 449 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 EGFL8Q99944 293 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 DGKBQ9Y6T7 804 aa13.77□□□□□ -0.2
USP42-206ENST00000479544 CNTFP26441 200 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 IL1R2P27930 398 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 RHBDF2Q6PJF5 856 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 CD101Q93033 1021 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 ULK4Q96C45 1275 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 NAT9Q9BTE0 207 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 DPP3Q9NY33 737 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 C6orf203Q9P0P8 240 aaPredicted RBP13.77□□□□□ -0.21
USP42-206ENST00000479544 ZNRF3Q9ULT6 936 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 MTA2O94776 668 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 ACAT1P24752 427 aaKnown RBP13.77□□□□□ -0.21
USP42-206ENST00000479544 MTTPP55157 894 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 OLFML1Q6UWY5 402 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 ARCQ7LC44 396 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 DPP9Q86TI2 863 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 MPP5Q8N3R9 675 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 LRTOMTQ8WZ04 291 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 ELMO1Q92556 727 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 EDEM1Q92611 657 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 RMDN1Q96DB5 314 aa13.77□□□□□ -0.21
USP42-206ENST00000479544 IFT43Q96FT9 208 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms