RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 SMIM29Q86T20 159 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 SLC25A41Q8N5S1 370 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 RNF152Q8N8N0 203 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 LRRC46Q96FV0 321 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 ZNF419Q96HQ0 510 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 GDF15Q99988 308 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 KRTAP4-3Q9BYR4 195 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 FRMD8Q9BZ67 464 aaPredicted RBP3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 BTBD1Q9H0C5 482 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 RETREG1Q9H6L5 497 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 OBP2AQ9NY56 170 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 TMOD4Q9NZQ9 345 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 SLC8A2Q9UPR5 921 aa3.68□□□□□ -1.82
CCDC88A-212ENST00000474059 BMPR1BO00238 502 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 AREL1O15033 823 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 NPC1O15118 1278 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 COQ9O75208 318 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 PRSS2P07478 247 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 SNRNP70P08621 437 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 GABRB3P28472 473 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 GLIPR1P48060 266 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 NSUN2Q08J23 767 aaKnown RBP eCLIP3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 GRM3Q14832 879 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 SLC5A9Q2M3M2 681 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 ARHGAP29Q52LW3 1261 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 ARHGAP15Q53QZ3 475 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 KLHDC7AQ5VTJ3 777 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 TMEM71Q6P5X7 295 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 TMED6Q8WW62 240 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 RTP4Q96DX8 246 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 MCRS1Q96EZ8 462 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 APOLD1Q96LR9 279 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 PAAF1Q9BRP4 392 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 SORBS1Q9BX66 1292 aaKnown RBP3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 C1QTNF5Q9BXJ0 243 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 SLC52A1Q9NWF4 448 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 FBXO4Q9UKT5 387 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 SNED1Q8TER0 1413 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 LMTK3Q96Q04 1460 aa3.67□□□□□ -1.82
CCDC88A-212ENST00000474059 DENND3A2RUS2 1198 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 KCNJ18B7U540 433 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 M0QYT0 321 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 LDB2O43679 373 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 CAND2O75155 1236 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 SOX30O94993 753 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 PEPDP12955 493 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 FOXL2P58012 376 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 DSC1Q08554 894 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 DAG1Q14118 895 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 ZNF284Q2VY69 593 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 DGKHQ86XP1 1220 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 SLC22A17Q8WUG5 538 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 TIFAQ96CG3 184 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 IQCDQ96DY2 449 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 FIZ1Q96SL8 496 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 NUDT22Q9BRQ3 303 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 UNKQ9C0B0 810 aaKnown RBP3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 B3GNT4Q9C0J1 378 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 OSBPL5Q9H0X9 879 aaPredicted RBP3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 PCDHAC1Q9H158 963 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 DONSONQ9NYP3 566 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 ZMYND8Q9ULU4 1186 aaPredicted RBP3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 PCDHGB6Q9Y5F9 930 aa3.66□□□□□ -1.82
CCDC88A-212ENST00000474059 CCDC194A0A1B0GVG4 234 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 THAP12O43422 761 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 LIASO43766 372 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 MGEA5O60502 916 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 TAF5LO75529 589 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 ITGA5P08648 1049 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 GNLYP22749 145 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 FAM193AP78312 1265 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 ZBTB16Q05516 673 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 HLTFQ14527 1009 aaKnown RBP eCLIP3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 GBX1Q14549 363 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 KIF19Q2TAC6 998 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 MAP9Q49MG5 647 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 CCDC146Q8IYE0 955 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 KLHL31Q9H511 634 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 PRDM11Q9NQV5 511 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 RNF146Q9NTX7 359 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 PCDHB7Q9Y5E2 793 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 MMP24Q9Y5R2 645 aa3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 FRMPD2Q68DX3 1309 aaPredicted RBP3.65□□□□□ -1.83
CCDC88A-212ENST00000474059 LOC105369274A0A096LPK9 316 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 LOC102724159A0A0B4J2E5 919 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 LOC102723532A0A0G2JNH3 316 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 MSI1O43347 362 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 BUB3O43684 328 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 KRT18P05783 430 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 F7P08709 466 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 ALDOCP09972 364 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 PWP2Q15269 919 aaKnown RBP3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 CCSAPQ6IQ19 270 aaPredicted RBP3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 USP17L6PQ6QN14 398 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 KRTAP5-2Q701N4 177 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 FAM217AQ8IXS0 508 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 OR4N4Q8N0Y3 316 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 PMM1Q92871 262 aa3.64□□□□□ -1.83
CCDC88A-212ENST00000474059 PHKBQ93100 1093 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms