RNA–Protein interactions for RNA: ENST00000469550.6

HDAC3-205, Transcript of histone deacetylase 3, humanhuman

TSL 1 (best)

Gene HDAC3, Length 1,952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-205ENST00000469550 C10orf88Q9H8K7 445 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 RSAD1Q9HA92 442 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 POPDC2Q9HBU9 364 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 XAB2Q9HCS7 855 aaKnown RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 TIMMDC1Q9NPL8 285 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 DNAAF2Q9NVR5 837 aaKnown RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 C6orf203Q9P0P8 240 aaPredicted RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 PAK5Q9P286 719 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 HSFX1Q9UBD0 423 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 TCEAL9Q9UHQ7 104 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 CDH22Q9UJ99 828 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 APOBEC2Q9Y235 224 aaKnown RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 MYH9P35579 1960 aaKnown RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 PRR33A8MZF0 331 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 VILLO15195 856 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 ENDOD1O94919 500 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 ATG7O95352 703 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 TFAP2AP05549 437 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 INSRRP14616 1297 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 ALOX15P16050 662 aaPredicted RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 IL1R2P27930 398 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 PEX2P28328 305 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 SSTR3P32745 418 aaPredicted RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 RFC1P35251 1148 aaPredicted RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 FDFT1P37268 417 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 SLC26A2P50443 739 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 INHBCP55103 352 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 YWHAZP63104 245 aaKnown RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 ROR1Q01973 937 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 FOLH1Q04609 750 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 ZP2Q05996 745 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 NOMO1Q15155 1222 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 TRIP10Q15642 601 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 USP41Q3LFD5 358 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 IER5Q5VY09 327 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 NPAS4Q8IUM7 802 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 CTAGE3PQ8IX95 158 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 ACMSDQ8TDX5 336 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 GFM2Q969S9 779 aaKnown RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 RTP4Q96DX8 246 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 FAM84AQ96KN4 292 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 CATSPER2Q96P56 530 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 EBF4Q9BQW3 602 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 ZNF395Q9H8N7 513 aaPredicted RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 AGO3Q9H9G7 860 aaKnown RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 CYP26B1Q9NR63 512 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 ETNK2Q9NVF9 386 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 DNAJC28Q9NX36 388 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 RBAKQ9NYW8 714 aaPredicted RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 CLIC5Q9NZA1 410 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 ZC3H7BQ9UGR2 993 aaKnown RBP9.83□□□□□ -0.84
HDAC3-205ENST00000469550 RAB26Q9ULW5 256 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 POMPQ9Y244 141 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 PCDHA10Q9Y5I2 948 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 TRPV2Q9Y5S1 764 aa9.83□□□□□ -0.84
HDAC3-205ENST00000469550 SF3B1O75533 1304 aaKnown RBP eCLIP9.82□□□□□ -0.849e-6■■■■■ 87.9
HDAC3-205ENST00000469550 CNTNAP2Q9UHC6 1331 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 IGKV6D-21A0A0A0MT36 114 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 C15orf38-AP3S2A0A0A6YYH1 394 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 SMIM35A0A1B0GVV1 85 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 CXorf49A8MYA2 514 aaPredicted RBP9.82□□□□□ -0.84
HDAC3-205ENST00000469550 H3BNX3 289 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 CYB561D2O14569 222 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 GRM6O15303 877 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 ZSCAN9O15535 394 aaPredicted RBP9.82□□□□□ -0.84
HDAC3-205ENST00000469550 CLPTM1O96005 669 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 ASS1P00966 412 aaKnown RBP9.82□□□□□ -0.84
HDAC3-205ENST00000469550 APOEP02649 317 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 SPATA31D3P0C874 917 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 SETSIPP0DME0 302 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 KITP10721 976 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 KRT3P12035 628 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 LTBRP36941 435 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 MAGEA8P43361 318 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 GABRB2P47870 512 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 USP46P62068 366 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 TBL3Q12788 808 aaKnown RBP9.82□□□□□ -0.84
HDAC3-205ENST00000469550 NCOA4Q13772 614 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 ADRM1Q16186 407 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 C1orf228Q6PIY5 440 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 SPATA31D4Q6ZUB0 917 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 ARPINQ7Z6K5 226 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 TRIM74Q86UV6 250 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 TRIM73Q86UV7 250 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 RFX6Q8HWS3 928 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 AHI1Q8N157 1196 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 FBXW8Q8N3Y1 598 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 KCTD6Q8NC69 237 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 MCUQ8NE86 351 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 CATSPER1Q8NEC5 780 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 SPATA18Q8TC71 538 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 NMD3Q96D46 503 aaKnown RBP9.82□□□□□ -0.84
HDAC3-205ENST00000469550 KCNK16Q96T55 309 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 MRPS26Q9BYN8 205 aaKnown RBP9.82□□□□□ -0.84
HDAC3-205ENST00000469550 IMPG2Q9BZV3 1241 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 RBM38Q9H0Z9 239 aaKnown RBP9.82□□□□□ -0.84
HDAC3-205ENST00000469550 LHX5Q9H2C1 402 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 ZNF696Q9H7X3 374 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 XPNPEP1Q9NQW7 623 aa9.82□□□□□ -0.84
HDAC3-205ENST00000469550 MARCOQ9UEW3 520 aaPredicted RBP9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms