RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 HOXA11P31270 313 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 USP8P40818 1118 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 ATP5OP48047 213 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 IFNAR2P48551 515 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 PIK3CGP48736 1102 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 CENPAP49450 140 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 RBM6P78332 1123 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 CTAG1AP78358 180 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 CCNA1P78396 465 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 BFSP1Q12934 665 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 TRPC3Q13507 836 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 NAA25Q14CX7 972 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 MAJINQ3KP22 176 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 ZACNQ401N2 412 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 C1orf141Q5JVX7 400 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 TPGS2Q68CL5 300 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 CEP85Q6P2H3 762 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 SHQ1Q6PI26 577 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 ZNF66Q6ZN08 573 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 GBP6Q6ZN66 633 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 YTHDF3Q7Z739 585 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 PRPF39Q86UA1 669 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 DENND1CQ8IV53 801 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 TMEM57Q8N5G2 664 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 SPERTQ8NA61 448 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 FANCBQ8NB91 859 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 PCSK9Q8NBP7 692 aaKnown RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 PHKBQ93100 1093 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 GIMAP5Q96F15 307 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 CDCA5Q96FF9 252 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 CABS1Q96KC9 395 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 RUNDC3BQ96NL0 473 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 WDR24Q96S15 920 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 PPP1R9BQ96SB3 815 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 TINAGL1Q9GZM7 467 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 SERHLQ9NQF3 203 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 RLIMQ9NVW2 624 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 TBC1D14Q9P2M4 693 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 GRID1Q9ULK0 1009 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 BARX2Q9UMQ3 279 aaPredicted RBP5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 SNX8Q9Y5X2 465 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 RAD54BQ9Y620 910 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 AP1M2Q9Y6Q5 423 aa5.14□□□□□ -1.59
CCDC88A-210ENST00000468534 GOLGA6L10A0A0M3HER8 536 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 hCG_1807616A0A1W2PRN6 198 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 PRSS29PA6NIE9 313 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 LRRC72A6NJI9 287 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 TMCO5BA8MYB1 307 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 F8VZ95 297 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 SGK1O00141 431 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 UBE2CO00762 179 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 THAP12O43422 761 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 NMT2O60551 498 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 SEC22BO75396 215 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 FGF18O76093 207 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 DDHD2O94830 711 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 UBXN7O94888 489 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 RTN3O95197 1032 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 PGM3O95394 542 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 FGFR1OPO95684 399 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 THP07101 528 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 HEXBP07686 556 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 SNRNP70P08621 437 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 NHLRC4P0CG21 123 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 NR2F1P10589 423 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 RARBP10826 455 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 GCLCP48506 637 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 FXR1P51114 621 aaKnown RBP eCLIP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 CASP6P55212 293 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 KRTAP10-9P60411 292 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 ARF3P61204 181 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 ARF1P84077 181 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 RELQ04864 619 aaPredicted RBP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 ZNF543Q08ER8 600 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 ARHGEF6Q15052 776 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 PROSER3Q2NL68 480 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 GGT6Q6P531 493 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 IYDQ6PHW0 289 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 NPNTQ6UXI9 565 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 B4GALNT4Q76KP1 1039 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 SLC29A4Q7RTT9 530 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 ZNF804AQ7Z570 1209 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 C9orf106Q8NAJ2 232 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 C3orf20Q8ND61 904 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 DENND6BQ8NEG7 585 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 BRI3BPQ8WY22 251 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 LRTOMTQ8WZ04 291 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 PTP4A1Q93096 173 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 EXOC4Q96A65 974 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 ZBTB9Q96C00 473 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 PPP1R13BQ96KQ4 1090 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 QTRT1Q9BXR0 403 aaKnown RBP5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 NACA2Q9H009 215 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 BTBD1Q9H0C5 482 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 PDCL3Q9H2J4 239 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 TNMDQ9H2S6 317 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 VCPKMTQ9H867 229 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 GPR35Q9HC97 309 aa5.13□□□□□ -1.59
CCDC88A-210ENST00000468534 DDX18Q9NVP1 670 aaKnown RBP5.13□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms