RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 RGS2P41220 211 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 GARSP41250 739 aaKnown RBP9.15□□□□□ -0.94
SYNE1-217ENST00000466159 SLC1A6P48664 564 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 HCAR3P49019 387 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 HUNKP57058 714 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 KDSRQ06136 332 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 NAB1Q13506 487 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 UBAP2LQ14157 1087 aaKnown RBP9.15□□□□□ -0.94
SYNE1-217ENST00000466159 UPP1Q16831 310 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 ARL13BQ3SXY8 428 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 KCTD11Q693B1 232 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 RPAINQ86UA6 219 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 PLD6Q8N2A8 252 aaKnown RBP9.15□□□□□ -0.94
SYNE1-217ENST00000466159 DCLK2Q8N568 766 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 TRPV1Q8NER1 839 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 HASPINQ8TF76 798 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 MYLPFQ96A32 169 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 CPNE1Q99829 537 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 SNX15Q9NRS6 342 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 BFARQ9NZS9 450 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 BPTFQ12830 3046 aa9.15□□□□□ -0.94
SYNE1-217ENST00000466159 PRR5-ARHGAP8B1AHC4 643 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 NCAM2O15394 837 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 PGK1P00558 417 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 POMCP01189 267 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 CDC25CP30307 473 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 BRCC3P46736 316 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 CXCR3P49682 368 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 CLNS1AP54105 237 aaKnown RBP9.15□□□□□ -0.95
SYNE1-217ENST00000466159 ARHGAP8P85298 464 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 GALNT2Q10471 571 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 HSP90AA5PQ58FG0 334 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 ACSBG2Q5FVE4 666 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 GRTP1Q5TC63 336 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 FSTL4Q6MZW2 842 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 STRA8Q7Z7C7 330 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 TMEM135Q86UB9 458 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 TAC4Q86UU9 113 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 TNS4Q8IZW8 715 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.15□□□□□ -0.95
SYNE1-217ENST00000466159 PIWIL2Q8TC59 973 aaKnown RBP9.15□□□□□ -0.95
SYNE1-217ENST00000466159 HDAC11Q96DB2 347 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 CCDC106Q9BWC9 280 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 GBA3Q9H227 469 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 CXorf56Q9H5V9 222 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 CAB39LQ9H9S4 337 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 CASS4Q9NQ75 786 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 CHRAC1Q9NRG0 131 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 TMLHEQ9NVH6 421 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 RPL26L1Q9UNX3 145 aaKnown RBP9.15□□□□□ -0.95
SYNE1-217ENST00000466159 PTCH2Q9Y6C5 1203 aa9.15□□□□□ -0.95
SYNE1-217ENST00000466159 MRPL42Q9Y6G3 142 aaKnown RBP9.15□□□□□ -0.95
SYNE1-217ENST00000466159 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.15□□□□□ -0.95
SYNE1-217ENST00000466159 TTC3P53804 2025 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 CCDC78A2IDD5 438 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 GOLGA8TH3BQL2 631 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 B3GAT3O94766 335 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 F9P00740 461 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 JCHAINP01591 159 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SRGAP2BP0DMP2 458 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 AKR1A1P14550 325 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 PGM1P36871 562 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 PTDSS1P48651 473 aaKnown RBP9.14□□□□□ -0.95
SYNE1-217ENST00000466159 CDK18Q07002 472 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 DLG2Q15700 870 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 ANKRD20A4Q4UJ75 823 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 C17orf99Q6UX52 265 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 WDR75Q8IWA0 830 aaKnown RBP9.14□□□□□ -0.95
SYNE1-217ENST00000466159 RBM15BQ8NDT2 890 aaKnown RBP9.14□□□□□ -0.95
SYNE1-217ENST00000466159 USP33Q8TEY7 942 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 RNF34Q969K3 372 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 TMEM209Q96SK2 561 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SORT1Q99523 831 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 RBBP8Q99708 897 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 APBA2Q99767 749 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 EPAS1Q99814 870 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SENP6Q9GZR1 1112 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-217ENST00000466159 DCLRE1BQ9H816 532 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 CSNK1G1Q9HCP0 422 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 PNPOQ9NVS9 261 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 COPG2Q9UBF2 871 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 RAD54BQ9Y620 910 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 ARHGAP42A6NI28 874 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 MGEA5O60502 916 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 KRT36O76013 467 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 USP1O94782 785 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 IGHA2P01877 340 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SERPINE1P05121 402 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SERPINA6P08185 405 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 MX2P20592 715 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 PCSK1P29120 753 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 CTGFP29279 349 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 PSEN1P49768 467 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 SESN3P58005 492 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 TUBB3Q13509 450 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 ITGA9Q13797 1035 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 TAF11Q15544 211 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 ARHGAP36Q6ZRI8 547 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 OTOP3Q7RTS5 596 aa9.14□□□□□ -0.95
SYNE1-217ENST00000466159 MAVSQ7Z434 540 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms