RNA–Protein interactions for RNA: ENST00000456581.1

LINC00959-201, Transcript of HCG1648656, isoform CRA_a, humanhuman

TSL 2

Gene LINC00959, Length 2,843 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00959-201ENST00000456581 IRF5Q13568 498 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 N4BP2L1Q5TBK1 243 aaPredicted RBP12.73□□□□□ -0.37
LINC00959-201ENST00000456581 LIMS2Q7Z4I7 341 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 SERINC5Q86VE9 423 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 TNS4Q8IZW8 715 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 AZIN2Q96A70 460 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 PGBD4Q96DM1 585 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 HHIPL1Q96JK4 782 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 UBE2OQ9C0C9 1292 aaKnown RBP12.73□□□□□ -0.37
LINC00959-201ENST00000456581 TMEM88BA6NKF7 163 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 NRP1O14786 923 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 HNRNPCL1O60812 293 aaKnown RBP12.73□□□□□ -0.37
LINC00959-201ENST00000456581 PRKCHP24723 683 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 L1CAMP32004 1257 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 CPOXP36551 454 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 CCNFP41002 786 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 STX3Q13277 289 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 GK3PQ14409 553 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 CLEC20AQ6ZU45 233 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 SLC26A9Q7LBE3 791 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 CMC1Q7Z7K0 106 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.73□□□□□ -0.37
LINC00959-201ENST00000456581 C7orf26Q96N11 449 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 KLC2Q9H0B6 622 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 PAK5Q9P286 719 aa12.73□□□□□ -0.37
LINC00959-201ENST00000456581 G3BP2Q9UN86 482 aaKnown RBP12.73□□□□□ -0.37
LINC00959-201ENST00000456581 DPYSL4O14531 572 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 SEPT4O43236 478 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 XPOTO43592 962 aaKnown RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 BUD23O43709 281 aaKnown RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 SNNO75324 88 aaPredicted RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 PROCP04070 461 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 THP07101 528 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 SETSIPP0DME0 302 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 CYP2F1P24903 491 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 LRPAP1P30533 357 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 PNPLA4P41247 253 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 BRCC3P46736 316 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 RAP1GDS1P52306 607 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 ACTR3P61158 418 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 SREBF2Q12772 1141 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 DLG1Q12959 904 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 USP4Q13107 963 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 MSLNQ13421 630 aaPredicted RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 BOLA3Q53S33 107 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 C10orf107Q8IVU9 208 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 MAP7D3Q8IWC1 876 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 PHTF2Q8N3S3 785 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 SLC26A7Q8TE54 656 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 KCTD15Q96SI1 283 aaPredicted RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 C11orf84Q9BUA3 381 aaPredicted RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 NDE1Q9NXR1 346 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 CCDC78A2IDD5 438 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 ITGB1P05556 798 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 GOT1P17174 413 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 PEX2P28328 305 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 GSTT1P30711 240 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 TM4SF4P48230 202 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 AQP4P55087 323 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 NME3Q13232 169 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 TUBB3Q13509 450 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 PDE1CQ14123 709 aaPredicted RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 TFDP2Q14188 446 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 TIGD5Q53EQ6 642 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 CFAP157Q5JU67 520 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 OTUD1Q5VV17 481 aaPredicted RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 KCNT2Q6UVM3 1135 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 MYLK4Q86YV6 388 aaPredicted RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 ECSITQ9BQ95 431 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 DUSP16Q9BY84 665 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 WWP1Q9H0M0 922 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 RPL26L1Q9UNX3 145 aaKnown RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 AP4E1Q9UPM8 1137 aa12.72□□□□□ -0.37
LINC00959-201ENST00000456581 MRPL42Q9Y6G3 142 aaKnown RBP12.72□□□□□ -0.37
LINC00959-201ENST00000456581 SDR42E2A6NKP2 422 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 KLF11O14901 512 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 USP12O75317 370 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 FGF3P11487 239 aaPredicted RBP12.71□□□□□ -0.37
LINC00959-201ENST00000456581 VAV1P15498 845 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 WARSP23381 471 aaKnown RBP12.71□□□□□ -0.37
LINC00959-201ENST00000456581 C1QTNF8P60827 252 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 CNPY1Q3B7I2 92 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 ATG16L1Q676U5 607 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 HPS6Q86YV9 775 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 PCED1BQ96HM7 432 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 TNIP3Q96KP6 325 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 HNRNPABQ99729 332 aaKnown RBP12.71□□□□□ -0.37
LINC00959-201ENST00000456581 VCXQ9H320 206 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 NRDE2Q9H7Z3 1164 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 SEPT10Q9P0V9 454 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 ZNF212Q9UDV6 495 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 GABRDO14764 452 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 CIB2O75838 187 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 PGM3O95394 542 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 ERVK-10P10266 1014 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 NPR3P17342 541 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 NCF2P19878 526 aaPredicted RBP12.71□□□□□ -0.37
LINC00959-201ENST00000456581 CCR10P46092 362 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 SULT1E1P49888 294 aa12.71□□□□□ -0.37
LINC00959-201ENST00000456581 DSG1Q02413 1049 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms