RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 SIGLEC11Q96RL6 698 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 PLEKHA2Q9HB19 425 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.43□□□□□ -1.7
USP40-209ENST00000452724 NOL12Q9UGY1 213 aaKnown RBP eCLIP4.43□□□□□ -1.7
USP40-209ENST00000452724 IPO11Q9UI26 975 aaKnown RBP4.43□□□□□ -1.7
USP40-209ENST00000452724 AFG3L2Q9Y4W6 797 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 LMTK3Q96Q04 1460 aa4.43□□□□□ -1.7
USP40-209ENST00000452724 LOC102724159A0A0B4J2E5 919 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 MCIDASD6RGH6 385 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 SNHG28P0DPA3 235 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 CHN1P15882 459 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 PRPH2P23942 346 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 CPA2P48052 419 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 ADPRHP54922 357 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 ZNF91Q05481 1191 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 RAPGEF1Q13905 1077 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 PWP2Q15269 919 aaKnown RBP4.42□□□□□ -1.7
USP40-209ENST00000452724 TWIST1Q15672 202 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 ZNF484Q5JVG2 852 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 RTL10Q7L3V2 364 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 MDGA2Q7Z553 956 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 ZNF354CQ86Y25 554 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 HERC6Q8IVU3 1022 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 PAQR4Q8N4S7 273 aaPredicted RBP4.42□□□□□ -1.7
USP40-209ENST00000452724 CEP70Q8NHQ1 597 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 ADAD1Q96M93 576 aaKnown RBP4.42□□□□□ -1.7
USP40-209ENST00000452724 PYM1Q9BRP8 204 aaKnown RBP4.42□□□□□ -1.7
USP40-209ENST00000452724 WACQ9BTA9 647 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 SCNM1Q9BWG6 230 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 CLPBQ9H078 707 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 RMI1Q9H9A7 625 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 MOV10Q9HCE1 1003 aaKnown RBP4.42□□□□□ -1.7
USP40-209ENST00000452724 TXNRD2Q9NNW7 524 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 RASSF1Q9NS23 344 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 SLC8A2Q9UPR5 921 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 DERAQ9Y315 318 aa4.42□□□□□ -1.7
USP40-209ENST00000452724 STX16-NPEPL1H3BU86 382 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 STX16O14662 325 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 INSIG1O15503 277 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 CTSAP10619 480 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 ACP5P13686 325 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 SCP2P22307 547 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 PNPLA4P41247 253 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 ID2Q02363 134 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 ALKBH1Q13686 389 aaKnown RBP4.41□□□□□ -1.7
USP40-209ENST00000452724 EFR3AQ14156 821 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 PGM5Q15124 567 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 TMEM95Q3KNT9 176 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 ARL13AQ5H913 290 aaPredicted RBP4.41□□□□□ -1.7
USP40-209ENST00000452724 FAM57BQ71RH2 274 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 TMEM200AQ86VY9 491 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 SMAP1Q8IYB5 467 aaPredicted RBP4.41□□□□□ -1.7
USP40-209ENST00000452724 ADGRF4Q8IZF3 695 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 IGFBPL1Q8WX77 278 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 KCNJ9Q92806 393 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 COQ8BQ96D53 544 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 COG8Q96MW5 612 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 HERC2P3Q9BVR0 1158 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 HDHD5Q9BXW7 423 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 SLC22A11Q9NSA0 550 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 SLC25A13Q9UJS0 675 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 DTX4Q9Y2E6 619 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 RRP7AQ9Y3A4 280 aaKnown RBP4.41□□□□□ -1.7
USP40-209ENST00000452724 PKP3Q9Y446 797 aa4.41□□□□□ -1.7
USP40-209ENST00000452724 NPIPB13A6NJU9 1138 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 NPIPB5A8MRT5 1133 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 NPIPB4C9JG80 1138 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 EIF3FO00303 357 aaPredicted RBP4.4□□□□□ -1.71
USP40-209ENST00000452724 ADAM10O14672 748 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 NTN1O95631 604 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 CSF1P09603 554 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 LYL1P12980 280 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 HOXD9P28356 352 aaPredicted RBP4.4□□□□□ -1.71
USP40-209ENST00000452724 FOXG1P55316 489 aaPredicted RBP4.4□□□□□ -1.71
USP40-209ENST00000452724 THOC5Q13769 683 aaKnown RBP4.4□□□□□ -1.71
USP40-209ENST00000452724 CTXN3Q4LDR2 81 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 KIAA1755Q5JYT7 1200 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 C10orf76Q5T2E6 689 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 LRIG3Q6UXM1 1119 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 ZNF517Q6ZMY9 492 aaPredicted RBP4.4□□□□□ -1.71
USP40-209ENST00000452724 ZNF793Q6ZN11 406 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 DEF8Q6ZN54 512 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 LINS1Q8NG48 757 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 WIPF2Q8TF74 440 aaPredicted RBP4.4□□□□□ -1.71
USP40-209ENST00000452724 RBM17Q96I25 401 aaKnown RBP4.4□□□□□ -1.71
USP40-209ENST00000452724 PIMREGQ9BSJ6 248 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 TRIM31Q9BZY9 425 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 PAPOLBQ9NRJ5 636 aaKnown RBP4.4□□□□□ -1.71
USP40-209ENST00000452724 TMEM184CQ9NVA4 438 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 TMEM45AQ9NWC5 275 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 ARL15Q9NXU5 204 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 FBXO4Q9UKT5 387 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 TNFSF13BQ9Y275 285 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 DNAJC16Q9Y2G8 782 aa4.4□□□□□ -1.71
USP40-209ENST00000452724 KCNJ18B7U540 433 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 F8W810 466 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 UGDHO60701 494 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 NFATC1O95644 943 aa4.39□□□□□ -1.71
USP40-209ENST00000452724 PKMP14618 531 aaKnown RBP4.39□□□□□ -1.71
USP40-209ENST00000452724 HOXB9P17482 250 aaPredicted RBP4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms