RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 GRAMD1CQ8IYS0 662 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 ADAM32Q8TC27 787 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 TAS2R13Q9NYV9 303 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 TRAF6Q9Y4K3 522 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 PCDHGB3Q9Y5G1 929 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 TNS3Q68CZ2 1445 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 SUPT3HB4E1H0 165 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 MEIOBQ8N635 442 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 C7orf57Q8NEG2 295 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 C7orf26Q96N11 449 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 NUDT12Q9BQG2 462 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 DENND2DQ9H6A0 471 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 GJB4Q9NTQ9 266 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 KLHL11Q9NVR0 708 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 TRPS1Q9UHF7 1281 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 FGF10O15520 208 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 CST8O60676 142 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 PET100P0DJ07 73 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 HNF4AP41235 474 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 RRP1BQ14684 758 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 RAD9BQ6WBX8 426 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 DCP1BQ8IZD4 617 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 LRRC19Q9H756 370 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 WWOXQ9NZC7 414 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 RNF112Q9ULX5 631 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 NRXN1Q9ULB1 1477 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 GNL1P36915 607 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 TMPRSS11AQ6ZMR5 421 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 EPHX4Q8IUS5 362 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 SLITRK4Q8IW52 837 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 UBQLN1Q9UMX0 589 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 PCDHGB1Q9Y5G3 927 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 C8BP07358 591 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 VAC14Q08AM6 782 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 SKIV2LQ15477 1246 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 ZNF549Q6P9A3 640 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 BAIAP2L2Q6UXY1 529 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 FAM43BQ6ZT52 329 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 PNKPQ96T60 521 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 GGA3Q9NZ52 723 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 RAB23Q9ULC3 237 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 MAGED2Q9UNF1 606 aaPredicted RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 KCNA6P17658 529 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 ITGALP20701 1170 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 GRK4P32298 578 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 GRIA1P42261 906 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 SLC1A6P48664 564 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 BCAT1P54687 386 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 HUNKP57058 714 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 NKAPQ8N5F7 415 aaKnown RBP7.31□□□□□ -1.24
VPS53-204ENST00000437048 C9orf72Q96LT7 481 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 CMTM6Q9NX76 183 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 ZDHHC9Q9Y397 364 aa7.31□□□□□ -1.24
VPS53-204ENST00000437048 NEMP1O14524 444 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ADAMDEC1O15204 470 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 IREB2P48200 963 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 NCOA4Q13772 614 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SWI5Q1ZZU3 235 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SPOUT1Q5T280 376 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 OOSP2Q86WS3 158 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 LRRC47Q8N1G4 583 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 DRAXINQ8NBI3 349 aaPredicted RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 ZNF248Q8NDW4 579 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 TDRD1Q9BXT4 1180 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 POLIQ9UNA4 740 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 FAM240BA0A1B0GVZ2 78 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 HDAC3O15379 428 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 PDPK1O15530 556 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SMNDC1O75940 238 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS53-204ENST00000437048 CD58P19256 250 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 DPY19L1Q2PZI1 675 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 TRPV3Q8NET8 790 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 FBXO25Q8TCJ0 367 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ZNF669Q96BR6 464 aaPredicted RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 ACSBG1Q96GR2 724 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ACTR6Q9GZN1 396 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 IL1RAPQ9NPH3 570 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 PTTG3PQ9NZH4 202 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 RAP2CQ9Y3L5 183 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 CHD2O14647 1828 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 USP27XA6NNY8 438 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 RPS6KA4O75676 772 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 RAG1P15918 1043 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 RRM1P23921 792 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 CDK8P49336 464 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 CDC16Q13042 620 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SF3B3Q15393 1217 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 TRIM40Q6P9F5 258 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 RFX8Q6ZV50 586 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 GLB1L3Q8NCI6 653 aaPredicted RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 TTYH1Q9H313 450 aaPredicted RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 MLXIPLQ9NP71 852 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 ZNF624Q9P2J8 865 aaPredicted RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 ZNF232Q9UNY5 417 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 GAKO14976 1311 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 GATBO75879 557 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 TM7SF2O76062 418 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 SERPINA3P01011 423 aa7.3□□□□□ -1.24
VPS53-204ENST00000437048 CFL1P23528 166 aaKnown RBP7.3□□□□□ -1.24
VPS53-204ENST00000437048 CBX3Q13185 183 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms