RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ZYG11BQ9C0D3 744 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 MFSD1Q9H3U5 465 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 DHX35Q9H5Z1 703 aaKnown RBP12.78□□□□□ -0.36
USP40-205ENST00000430158 PCDH18Q9HCL0 1135 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 TMEM248Q9NWD8 314 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 CWC15Q9P013 229 aaKnown RBP12.78□□□□□ -0.36
USP40-205ENST00000430158 GGA2Q9UJY4 613 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 HYOU1Q9Y4L1 999 aa12.78□□□□□ -0.36
USP40-205ENST00000430158 GON4LQ3T8J9 2241 aa12.77□□□□□ -0.36
USP40-205ENST00000430158 GRID2IPA4D2P6 1211 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 TBC1D3BA6NDS4 549 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 C3orf70A6NLC5 250 aaPredicted RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 TMEM110-MUSTN1A8MSY1 372 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 BUB1O43683 1085 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 ADAM23O75077 832 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 RNF40O75150 1001 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 IPO7O95373 1038 aaKnown RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 CD48P09326 243 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 HNRNPLP14866 589 aaKnown RBP eCLIP12.77□□□□□ -0.37
USP40-205ENST00000430158 GOT1P17174 413 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 DESP17661 470 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 MZF1P28698 734 aaPredicted RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 MAGEA9P43362 315 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 NOP2P46087 812 aaKnown RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 LRRC32Q14392 662 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 PTPRNQ16849 979 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 PLEKHG6Q3KR16 790 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 AFMIDQ63HM1 303 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 ANKS1BQ7Z6G8 1248 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 SETD3Q86TU7 594 aaPredicted RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 MAML2Q8IZL2 1156 aaPredicted RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 APCDD1Q8J025 514 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 ZNF557Q8N988 423 aaPredicted RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 KCNV2Q8TDN2 545 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 WFIKKN2Q8TEU8 576 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 EXOC4Q96A65 974 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 FAF2Q96CS3 445 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 MYO19Q96H55 970 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 CALR3Q96L12 384 aaKnown RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 MRGPRX3Q96LB0 322 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 PSMB7Q99436 277 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 FEM1AQ9BSK4 669 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 ZWILCHQ9H900 591 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 CD248Q9HCU0 757 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 POLR3BQ9NW08 1133 aaPredicted RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 ELOVL2Q9NXB9 296 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 THAP10Q9P2Z0 257 aaPredicted RBP12.77□□□□□ -0.37
USP40-205ENST00000430158 SDK1Q7Z5N4 2213 aa12.77□□□□□ -0.37
USP40-205ENST00000430158 FANCMQ8IYD8 2048 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.76□□□□□ -0.37
USP40-205ENST00000430158 A0A0D9SEW6 157 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 ILVBLA1L0T0 632 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 H0Y626 953 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 STK25O00506 426 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 DCLK1O15075 740 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 NCAM2O15394 837 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 TIMM44O43615 452 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 ZMPSTE24O75844 475 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 CSKP41240 450 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 MAPKAPK2P49137 400 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 ZNF135P52742 658 aaPredicted RBP12.76□□□□□ -0.37
USP40-205ENST00000430158 MRPS21P82921 87 aaKnown RBP12.76□□□□□ -0.37
USP40-205ENST00000430158 KIF5AQ12840 1032 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 MTAPQ13126 283 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 ZNF177Q13360 481 aaPredicted RBP12.76□□□□□ -0.37
USP40-205ENST00000430158 SLC12A1Q13621 1099 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 CDH18Q13634 790 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 DMC1Q14565 340 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 EIF4HQ15056 248 aaKnown RBP12.76□□□□□ -0.37
USP40-205ENST00000430158 TAZQ16635 292 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 PREPLQ4J6C6 727 aaPredicted RBP12.76□□□□□ -0.37
USP40-205ENST00000430158 PITRM1Q5JRX3 1037 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 EGFLAMQ63HQ2 1017 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 MBLAC2Q68D91 279 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 RFX8Q6ZV50 586 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 TFAP2DQ7Z6R9 452 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 KIAA1328Q86T90 577 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 UMODL1-AS1Q8N2C9 162 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 SPEM1Q8N4L4 309 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 RTL3Q8N8U3 475 aaKnown RBP12.76□□□□□ -0.37
USP40-205ENST00000430158 IL17RCQ8NAC3 791 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 SORCS1Q8WY21 1168 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 RAPGEF5Q92565 580 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 ACOX2Q99424 681 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 EPAS1Q99814 870 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.76□□□□□ -0.37
USP40-205ENST00000430158 ETNK2Q9NVF9 386 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 KIAA1522Q9P206 1035 aaPredicted RBP12.76□□□□□ -0.37
USP40-205ENST00000430158 WDFY4Q6ZS81 3184 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 NYNRINQ9P2P1 1898 aaKnown RBP12.76□□□□□ -0.37
USP40-205ENST00000430158 GPR179Q6PRD1 2367 aa12.76□□□□□ -0.37
USP40-205ENST00000430158 TYW5A2RUC4 315 aaKnown RBP12.75□□□□□ -0.37
USP40-205ENST00000430158 EEF2KO00418 725 aaKnown RBP12.75□□□□□ -0.37
USP40-205ENST00000430158 CREB3O43889 395 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 PAPSS2O95340 614 aaPredicted RBP12.75□□□□□ -0.37
USP40-205ENST00000430158 KRT7P08729 469 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 TDGF1P13385 188 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 ERCC2P18074 760 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 EPHB2P29323 1055 aa12.75□□□□□ -0.37
USP40-205ENST00000430158 CTSOP43234 321 aaPredicted RBP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms