RNA–Protein interactions for RNA: ENST00000429896.6

PTCH1-207, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 6,563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-207ENST00000429896 ERP44Q9BS26 406 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 POLR1EQ9GZS1 481 aaKnown RBP13.21□□□□□ -0.3
PTCH1-207ENST00000429896 CAPN10Q9HC96 672 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 PHIPQ8WWQ0 1821 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 TMEM247A6NEH6 219 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 VCLP18206 1134 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 OTOP3Q7RTS5 596 aa13.21□□□□□ -0.3
PTCH1-207ENST00000429896 GRM6O15303 877 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 ALDH1A2O94788 518 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 HOXA11P31270 313 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 SLC8A1P32418 973 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 ARL4DP49703 201 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 SULT2A1Q06520 285 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 TTC39BQ5VTQ0 682 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 CCDC124Q96CT7 223 aaKnown RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 ABHD8Q96I13 439 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 STN1Q9H668 368 aaKnown RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 ADA2Q9NZK5 511 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 RASA4BC9J798 803 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 RASA4O43374 803 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 NOL4O94818 638 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 PYGLP06737 847 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 MMP8P22894 467 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 LRRC49Q8IUZ0 686 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 DQX1Q8TE96 717 aaKnown RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 HERC2P3Q9BVR0 1158 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 KCND1Q9NSA2 647 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 MRPS17Q9Y2R5 130 aaKnown RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 LAMB1P07942 1786 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 A0A1W2PRU2 124 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 C9IYK1 514 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 CLDN11O75508 207 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 PDHA1P08559 390 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 HNRNPH3P31942 346 aaKnown RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 MAPK8P45983 427 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 RPL7AP62424 266 aaKnown RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 KDSRQ06136 332 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 CRELD2Q6UXH1 353 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 CRYBG2Q8N1P7 616 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 JOSD2Q8TAC2 188 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 ZNF461Q8TAF7 563 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 UBP1Q9NZI7 540 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 ESRRGP62508 458 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 MLLT1Q03111 559 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 FLOT2Q14254 428 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 STAT4Q14765 748 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 ARMC12Q5T9G4 340 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 SLC26A9Q7LBE3 791 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 TMCO2Q7Z6W1 182 aaPredicted RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 TRIM48Q8IWZ4 208 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 CHPFQ8IZ52 775 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 B4GALNT2Q8NHY0 566 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 SLC26A7Q8TE54 656 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 CEP41Q9BYV8 373 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 NR2E1Q9Y466 385 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 SYCE1LA8MT33 242 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 APOC4-APOC2K7ER74 178 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 APOC2P02655 101 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 FAAP100Q0VG06 881 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 MRNIPQ6NTE8 343 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 CEP70Q8NHQ1 597 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 EFHD1Q9BUP0 239 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 DRG1Q9Y295 367 aaKnown RBP13.2□□□□□ -0.3
PTCH1-207ENST00000429896 INSL5Q9Y5Q6 135 aa13.2□□□□□ -0.3
PTCH1-207ENST00000429896 HMGB1P1B2RPK0 211 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 SEC24DO94855 1032 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 PYGMP11217 842 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.19□□□□□ -0.33e-6■■■■■ 50.8
PTCH1-207ENST00000429896 C1QTNF7Q9BXJ2 289 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 BCO2Q9BYV7 579 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 WARS2Q9UGM6 360 aaKnown RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 HMGXB4Q9UGU5 601 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 GGT7Q9UJ14 662 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 ZSCAN5CA6NGD5 496 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 BTNL10A8MVZ5 291 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 DAOAP59103 153 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 ACOX1Q15067 660 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 ARMC6Q6NXE6 501 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 CLEC20AQ6ZU45 233 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 CCNJLQ8IV13 435 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 GRIN3AQ8TCU5 1115 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 PPP1R10Q96QC0 940 aaKnown RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 ZNF670Q9BS34 389 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 STAU1O95793 577 aaKnown RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 HAPLN1P10915 354 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 TACR2P21452 398 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 PBX1P40424 430 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 BEND6Q5SZJ8 279 aaPredicted RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 CHRDL2Q6WN34 429 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 TBC1D19Q8N5T2 526 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 DACH2Q96NX9 599 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 SUN2Q9UH99 717 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 SDR42E2A6NKP2 422 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 RNF103O00237 685 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 ACSL4O60488 711 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 CA3P07451 260 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 GGCXP38435 758 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 RGS4P49798 205 aa13.19□□□□□ -0.3
PTCH1-207ENST00000429896 HNRNPH2P55795 449 aaKnown RBP13.19□□□□□ -0.3
PTCH1-207ENST00000429896 TRIP4Q15650 581 aaPredicted RBP13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms