RNA–Protein interactions for RNA: ENST00000424674.1

SF3B1-205, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 4

Gene SF3B1, Length 723 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-205ENST00000424674 OR1N1Q8NGS0 311 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 PRPF31Q8WWY3 499 aaKnown RBP3.89□□□□□ -1.79
SF3B1-205ENST00000424674 GCDHQ92947 438 aaPredicted RBP3.89□□□□□ -1.79
SF3B1-205ENST00000424674 GFM2Q969S9 779 aaKnown RBP3.89□□□□□ -1.79
SF3B1-205ENST00000424674 TEKT1Q969V4 418 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 GIMAP5Q96F15 307 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 C1orf74Q96LT6 269 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 CTAGE1Q96RT6 745 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 WDR24Q96S15 920 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 MPHOSPH9Q99550 1183 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 TCF25Q9BQ70 676 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 TBCDQ9BTW9 1192 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 MRPL1Q9BYD6 325 aaKnown RBP3.89□□□□□ -1.79
SF3B1-205ENST00000424674 NYXQ9GZU5 481 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 USP44Q9H0E7 712 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 CHST8Q9H2A9 424 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 SLC6A15Q9H2J7 730 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 CLSTN2Q9H4D0 955 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 PRDM12Q9H4Q4 367 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 DNAJC18Q9H819 358 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 SMURF2Q9HAU4 748 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 NRIP3Q9NQ35 241 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 TCP11L1Q9NUJ3 509 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 TBC1D23Q9NUY8 699 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 NMRK1Q9NWW6 199 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 CHCHD3Q9NX63 227 aaKnown RBP3.89□□□□□ -1.79
SF3B1-205ENST00000424674 SEPT10Q9P0V9 454 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 DNAI1Q9UI46 699 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 CPSF3Q9UKF6 684 aaKnown RBP3.89□□□□□ -1.79
SF3B1-205ENST00000424674 CORO1CQ9ULV4 474 aaPredicted RBP3.89□□□□□ -1.79
SF3B1-205ENST00000424674 JRKLQ9Y4A0 524 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 PCDHA1Q9Y5I3 950 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 FPGT-TNNI3KV9GXZ4 949 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 RAD54L2Q9Y4B4 1467 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 ZNF804BA4D1E1 1349 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 IGSF1Q8N6C5 1336 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 KDM3AQ9Y4C1 1321 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 TMEM94Q12767 1356 aa3.89□□□□□ -1.79
SF3B1-205ENST00000424674 LINC00854A0A1B0GVQ3 168 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 A0A1W2PRV1 198 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 KRTAP23-1A1A580 65 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 ARHGEF37A1IGU5 675 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 A4D1N5 150 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 NPIPB15A6NHN6 443 aaPredicted RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 MYO1GB0I1T2 1018 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 PYCARD-AS1I3L0S3 204 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 OVOL3O00110 214 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 O00370 1275 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 TNPO2O14787 897 aaKnown RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 SCAMP1O15126 338 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 POLR3GO15318 223 aaPredicted RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 HNRNPRO43390 633 aaKnown RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 DNPH1O43598 174 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 NRP2O60462 931 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 BCAS2O75934 225 aaPredicted RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 CAMTA2O94983 1202 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 FTCDO95954 541 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 TPOP07202 933 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 SPARCP09486 303 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 XRCC6P12956 609 aaKnown RBP eCLIP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 TMEM11P17152 192 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 MALP21145 153 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 CPT2P23786 658 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 GARSP41250 739 aaKnown RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 GPD2P43304 727 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 ATP5OP48047 213 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 KCNJ5P48544 419 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 ADCY7P51828 1080 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 RBM5P52756 815 aaKnown RBP eCLIP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 BPIFB4P59827 614 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 TGFB2P61812 414 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 PRAMEP78395 509 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 KCNJ10P78508 379 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 MRPS5P82675 430 aaKnown RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 ATP2C1P98194 919 aaPredicted RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 SATB1Q01826 763 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 DEUP1Q05D60 604 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 TEFQ10587 303 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 LMAN2Q12907 356 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 CRHR2Q13324 411 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 ITGA7Q13683 1181 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 TUBA3CQ13748 450 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 CAPSQ13938 189 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 RCN2Q14257 317 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 NOMO1Q15155 1222 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 SYCP1Q15431 976 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 NFIL3Q16649 462 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 RABL6Q3YEC7 729 aaPredicted RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 TRIM60Q495X7 471 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 XKR9Q5GH70 373 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 MPP7Q5T2T1 576 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 TMTC4Q5T4D3 741 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 LIPMQ5VYY2 423 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 ETFRF1Q6IPR1 90 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 CTR9Q6PD62 1173 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 TUBA3EQ6PEY2 450 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 MEX3BQ6ZN04 569 aaKnown RBP3.88□□□□□ -1.79
SF3B1-205ENST00000424674 LINC00696Q6ZRV3 163 aa3.88□□□□□ -1.79
SF3B1-205ENST00000424674 USP49Q70CQ1 688 aa3.88□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms