RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 APCDD1Q8J025 514 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 OSCP1Q8WVF1 389 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 ZNF419Q96HQ0 510 aaPredicted RBP13.79□□□□□ -0.2
PRPF39-202ENST00000424478 TICRRQ7Z2Z1 1910 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 APOC4-APOC2K7ER74 178 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 SNAP91O60641 907 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 APOC2P02655 101 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 RBP3P10745 1247 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 VAV1P15498 845 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 PAPOLAP51003 745 aaKnown RBP13.79□□□□□ -0.2
PRPF39-202ENST00000424478 HTR4Q13639 388 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 TFDP2Q14188 446 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 RABGAP1LQ5R372 815 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 RNF219Q5W0B1 726 aaPredicted RBP13.79□□□□□ -0.2
PRPF39-202ENST00000424478 OTOP3Q7RTS5 596 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 SORCS1Q8WY21 1168 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 NECTIN4Q96NY8 510 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 TRIM51Q9BSJ1 452 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 TRIM31Q9BZY9 425 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 KCNK12Q9HB15 430 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 ABCB8Q9NUT2 735 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 STOML2Q9UJZ1 356 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 TTLL3Q9Y4R7 772 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 GFRA2O00451 464 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 IFNB1P01574 187 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 RHOXF2BP0C7M4 288 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 RHOQP17081 205 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 PSMC3P17980 439 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 RBL1P28749 1068 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 HOXC13P31276 330 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 CHKAP35790 457 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 CSKP41240 450 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 TRADDQ15628 312 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 TEX35Q5T0J7 233 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 YAF2Q8IY57 180 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 FAM71DQ8N9W8 422 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 FAM83CQ9BQN1 747 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 RHOXF2Q9BQY4 288 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 MUC3BQ9H195 1237 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 CATSPERBQ9H7T0 1116 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 ZNF148Q9UQR1 794 aa13.79□□□□□ -0.2
PRPF39-202ENST00000424478 LIASO43766 372 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 GJB3O75712 270 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 ETFBP38117 255 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 CCDC137Q6PK04 289 aaKnown RBP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 DDX42Q86XP3 938 aaKnown RBP eCLIP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 RNF135Q8IUD6 432 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 MFSD6LQ8IWD5 586 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 MNS1Q8NEH6 495 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 LRRC1Q9BTT6 524 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 TMEM248Q9NWD8 314 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 NCOR1O75376 2440 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 A0A1B0GVM2 712 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 CTAGE15A4D2H0 777 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 TCAF2A6NFQ2 919 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 RASA4BC9J798 803 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 TTI1O43156 1089 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 RASA4O43374 803 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 RHOCP08134 193 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 CTAGE8P0CG41 777 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 HLA-FP30511 346 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 KDSRQ06136 332 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 ZNF177Q13360 481 aaPredicted RBP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 NOMO1Q15155 1222 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 SMAD2Q15796 467 aaKnown RBP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 IL31Q6EBC2 164 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 DARS2Q6PI48 645 aaKnown RBP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 CTAGE6Q86UF2 777 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 CTAGE4Q8IX94 777 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 FAM217AQ8IXS0 508 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 HJURPQ8NCD3 748 aaPredicted RBP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 CHFRQ96EP1 664 aa13.78□□□□□ -0.2
PRPF39-202ENST00000424478 RPL10LQ96L21 214 aaKnown RBP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 RCOR3Q9P2K3 495 aaPredicted RBP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 TTC7AQ9ULT0 858 aaPredicted RBP13.78□□□□□ -0.2
PRPF39-202ENST00000424478 ESYT3A0FGR9 886 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 CBX4O00257 560 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 CES2O00748 559 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 LUC7L3O95232 432 aaKnown RBP13.77□□□□□ -0.2
PRPF39-202ENST00000424478 PFKLP17858 780 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 PTPN7P35236 360 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 CTSOP43234 321 aaPredicted RBP13.77□□□□□ -0.2
PRPF39-202ENST00000424478 LMAN2Q12907 356 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 BYSLQ13895 437 aaKnown RBP13.77□□□□□ -0.2
PRPF39-202ENST00000424478 POLD3Q15054 466 aaPredicted RBP13.77□□□□□ -0.2
PRPF39-202ENST00000424478 CCDC105Q8IYK2 499 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 AZIN2Q96A70 460 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 TRMT61BQ9BVS5 477 aaKnown RBP13.77□□□□□ -0.2
PRPF39-202ENST00000424478 PHF7Q9BWX1 381 aaPredicted RBP13.77□□□□□ -0.2
PRPF39-202ENST00000424478 BRD9Q9H8M2 597 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 ECT2Q9H8V3 914 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 FBRSL1Q9HCM7 1045 aaKnown RBP13.77□□□□□ -0.2
PRPF39-202ENST00000424478 PPARGC1AQ9UBK2 798 aaKnown RBP13.77□□□□□ -0.2
PRPF39-202ENST00000424478 TTC28Q96AY4 2481 aa13.77□□□□□ -0.2
PRPF39-202ENST00000424478 RAMP2O60895 175 aa13.77□□□□□ -0.21
PRPF39-202ENST00000424478 BMP1P13497 986 aa13.77□□□□□ -0.21
PRPF39-202ENST00000424478 CD72P21854 359 aa13.77□□□□□ -0.21
PRPF39-202ENST00000424478 HCAR3P49019 387 aa13.77□□□□□ -0.21
PRPF39-202ENST00000424478 NRG1Q02297 640 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms