RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 TSC1Q92574 1164 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 AZIN2Q96A70 460 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 HSFY1Q96LI6 401 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 NT5C1BQ96P26 610 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 MYOCQ99972 504 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 GDF3Q9NR23 364 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 COX16Q9P0S2 106 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 TLR6Q9Y2C9 796 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 AK5Q9Y6K8 562 aa8.37□□□□□ -1.07
VIM-202ENST00000421459 PLXNA2O75051 1894 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 ITIH6Q6UXX5 1313 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 E5RJQ4 531 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 TRIM38O00635 465 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 CAPN9O14815 690 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 BNIP3LO60238 219 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 DFNA5O60443 496 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 FBXO21O94952 628 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 SRPRAP08240 638 aaKnown RBP8.36□□□□□ -1.07
VIM-202ENST00000421459 BMP6P22004 513 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 TBXAS1P24557 533 aaPredicted RBP8.36□□□□□ -1.07
VIM-202ENST00000421459 ABCG1P45844 678 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 CCR5P51681 352 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 APBA1Q02410 837 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 CENPCQ03188 943 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 CNTN1Q12860 1018 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 ARID5BQ14865 1188 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 ACCSLQ4AC99 568 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 CCDC40Q4G0X9 1142 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 RNF219Q5W0B1 726 aaPredicted RBP8.36□□□□□ -1.07
VIM-202ENST00000421459 KLHL10Q6JEL2 608 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 GJB7Q6PEY0 223 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 KANSL1Q7Z3B3 1105 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 C14orf80Q86SX3 495 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 CCAR2Q8N163 923 aaKnown RBP8.36□□□□□ -1.07
VIM-202ENST00000421459 SLC25A45Q8N413 288 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 EHBP1Q8NDI1 1231 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 ENGASEQ8NFI3 743 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 SERPINB11Q96P15 392 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 PRMT1Q99873 361 aaKnown RBP8.36□□□□□ -1.07
VIM-202ENST00000421459 DDX50Q9BQ39 737 aaKnown RBP8.36□□□□□ -1.07
VIM-202ENST00000421459 SCAND2PQ9GZW5 306 aaPredicted RBP8.36□□□□□ -1.07
VIM-202ENST00000421459 PRORYQ9H606 182 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 FZD3Q9NPG1 666 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 UCKL1Q9NWZ5 548 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 FZD4Q9ULV1 537 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 SCML1Q9UN30 329 aa8.36□□□□□ -1.07
VIM-202ENST00000421459 TYW5A2RUC4 315 aaKnown RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 LATO43561 262 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 SIGLEC6O43699 453 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 BRINP1O60477 761 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 GRAP2O75791 330 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 LETM1O95202 739 aaPredicted RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 MOCS3O95396 460 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 TRUB2O95900 331 aaKnown RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 ADH1BP00325 375 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 MT-CO1P00395 513 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 IGLV3-25P01717 112 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 KRT5P13647 590 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 C5AR1P21730 350 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 RPL34P49207 117 aaKnown RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 STX17P56962 302 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 TAS2R38P59533 333 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 NUCB2P80303 420 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 INSM1Q01101 510 aaPredicted RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 CCDC173Q0VFZ6 552 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 EIF4EBP2Q13542 120 aaPredicted RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 INAVAQ3KP66 663 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 COBLL1Q53SF7 1204 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 C6orf118Q5T5N4 469 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 AGBL4Q5VU57 503 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 SFMBT2Q5VUG0 894 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 NAPEPLDQ6IQ20 393 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 CXorf57Q6NSI4 855 aaKnown RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 FBXL22Q6P050 247 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 KDM7AQ6ZMT4 941 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 Q6ZVU0 165 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 CCDC117Q8IWD4 279 aaPredicted RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 WDTC1Q8N5D0 677 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 KDM1BQ8NB78 822 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 SPATA20Q8TB22 786 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 SLC39A7Q92504 469 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 SMARCE1Q969G3 411 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 SKA1Q96BD8 255 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 NXPE2Q96DL1 559 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 ALG14Q96F25 216 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 NAF1Q96HR8 494 aaKnown RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 GSDMAQ96QA5 445 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 SLC4A5Q9BY07 1137 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 GTPBP4Q9BZE4 634 aaKnown RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 INTS2Q9H0H0 1204 aaKnown RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 METTL14Q9HCE5 456 aaKnown RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 RMND1Q9NWS8 449 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 MAN1B1Q9UKM7 699 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 PCDHB1Q9Y5F3 818 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 PCDHGA1Q9Y5H4 931 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 SNX10Q9Y5X0 201 aa8.35□□□□□ -1.07
VIM-202ENST00000421459 FASNP49327 2511 aaKnown RBP8.35□□□□□ -1.07
VIM-202ENST00000421459 KCNU1A8MYU2 1149 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 PPP1R3GB7ZBB8 358 aa8.34□□□□□ -1.07
VIM-202ENST00000421459 F5H5T6 163 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms