RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GPRC5DQ9NZD1 345 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 MORF4L1Q9UBU8 362 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 LIMD1Q9UGP4 676 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 ZBTB6Q15916 424 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 NRF1Q16656 503 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 SENP6Q9GZR1 1112 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-206ENST00000409809 MIEF1Q9NQG6 463 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 GMIPQ9P107 970 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 MED24O75448 989 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 PRKD3O94806 890 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 LBPP18428 481 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 DRD4P21917 467 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 POU1F1P28069 291 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 PITPNAQ00169 270 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 USPL1Q5W0Q7 1092 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 TMEM126BQ8IUX1 230 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 YME1L1Q96TA2 773 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 LEF1Q9UJU2 399 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-206ENST00000409809 ZNF112Q9UJU3 913 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 G3V2T6 193 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 PLEKHA8P1O95397 391 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 GALK1P51570 392 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 GRIK3Q13003 919 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 TXNDC11Q6PKC3 985 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 C18orf25Q96B23 403 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-206ENST00000409809 KLHL11Q9NVR0 708 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 CHADO15335 359 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 ITGAVP06756 1048 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 PCSK1P29120 753 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 FUT11Q495W5 492 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 PLCZ1Q86YW0 608 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 SLITRK4Q8IW52 837 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 MAGEE2Q8TD90 523 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-206ENST00000409809 TBC1D13Q9NVG8 400 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 LRRC7Q96NW7 1537 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 CBX6O95503 412 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 ARHGEF7Q14155 803 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 TCEAL5Q5H9L2 206 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 GLRA4Q5JXX5 417 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 N4BP2L1Q5TBK1 243 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-206ENST00000409809 CATSPER4Q7RTX7 472 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 BSNDQ8WZ55 320 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 LBHD1Q9BQE6 289 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-206ENST00000409809 CCDC177Q9NQR7 707 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-206ENST00000409809 DMGDHQ9UI17 866 aaKnown RBP13.11□□□□□ -0.31
COL6A3-206ENST00000409809 NPHP3-ACAD11A0A0J9YXS1 232 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 TULP3O75386 442 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 GSTT2BP0CG30 244 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 CDK8P49336 464 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 ERVK-24P63145 666 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 TAF5Q15542 800 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 ZNF302Q9NR11 478 aa13.11□□□□□ -0.31
COL6A3-206ENST00000409809 DCXO43602 365 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 SNX4O95219 450 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 GPR107Q5VW38 600 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 PIWIL4Q7Z3Z4 852 aaKnown RBP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 SEPHS2Q99611 448 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 MTMR12Q9C0I1 747 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 MAGEB3O15480 346 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 PENKP01210 267 aaPredicted RBP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 SNRPB2P08579 225 aaKnown RBP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 ADORA1P30542 326 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 GNG2P59768 71 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 EPHA7Q15375 998 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 FBXO43Q4G163 708 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 ZDHHC17Q8IUH5 632 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 TRMOQ9BU70 441 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 OR2B2Q9GZK3 357 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 FAM170AA1A519 330 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 RGS14O43566 566 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 PRKAR2AP13861 404 aaKnown RBP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 EIF2S3LQ2VIR3 472 aaKnown RBP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 OLFML2AQ68BL7 652 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 SIRT2Q8IXJ6 389 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 ZNF420Q8TAQ5 688 aaPredicted RBP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 SLAIN2Q9P270 581 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 FAM172BPA6NC97 362 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 TM7SF2O76062 418 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 KCNJ2P63252 427 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 PTSQ03393 145 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 OR8H3Q8N146 312 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 NSUN6Q8TEA1 469 aaKnown RBP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 PCDH12Q9NPG4 1184 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 TRPV5Q9NQA5 729 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 ITGA7Q13683 1181 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 SPATS1Q496A3 300 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 USP43Q70EL4 1123 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 KCNK18Q7Z418 384 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 CDK5RAP1Q96SZ6 601 aaKnown RBP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 SLC22A4Q9H015 551 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 PDGFCQ9NRA1 345 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 AFF4Q9UHB7 1163 aaKnown RBP13.1□□□□□ -0.31
COL6A3-206ENST00000409809 GLS2Q9UI32 602 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 MBD5Q9P267 1494 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 METTL18O95568 372 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 NR6A1Q15406 480 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 USP17L2Q6R6M4 530 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 VAT1Q99536 393 aa13.1□□□□□ -0.31
COL6A3-206ENST00000409809 GYG1P46976 350 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms