RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 RBM20Q5T481 1227 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 N4BP2L1Q5TBK1 243 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 NAIF1Q69YI7 327 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 DENND5BQ6ZUT9 1274 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 RFX8Q6ZV50 586 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 FAM126BQ8IXS8 530 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ARRDC4Q8NCT1 418 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 OR52L1Q8NGH7 329 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 RAET1EQ8TD07 263 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF75CPQ92670 426 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 TMEM169Q96HH4 297 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 COQ7Q99807 217 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 MRIQ9BWK5 157 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 IRX2Q9BZI1 471 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 LRRC19Q9H756 370 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 CHST12Q9NRB3 414 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 GJB4Q9NTQ9 266 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 MAGEL2Q9UJ55 1249 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 PRAMEF22A3QJZ6 481 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ZBTB39O15060 712 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 MAGEC1O60732 1142 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 SERPINA6P08185 405 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 CSH1P0DML2 217 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 CSH2P0DML3 217 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 TUFMP49411 452 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 HMGCS2P54868 508 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 FCGRTP55899 365 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 CDC16Q13042 620 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 TNFAIP8L3Q5GJ75 292 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 SLC44A2Q8IWA5 706 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 RIT1Q92963 219 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 GLT1D1Q96MS3 346 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 FICDQ9BVA6 458 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 TARS2Q9BW92 718 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 NUAK2Q9H093 628 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ANKZF1Q9H8Y5 726 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 INTS13Q9NVM9 706 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 NINJ2Q9NZG7 142 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 CIDEBQ9UHD4 219 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 PCDHB5Q9Y5E4 795 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 JCADQ9P266 1359 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 RGSL1A5PLK6 1076 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 POLRMTO00411 1230 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 LTA4HP09960 611 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ERVK-10P10266 1014 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 TCF4P15884 667 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 HNRNPH3P31942 346 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 RCVRNP35243 200 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 KCNJ1P48048 391 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ALDH7A1P49419 539 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 CLK3P49761 638 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 CLCN2P51788 898 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF844Q08AG5 666 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 PCSK7Q16549 785 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 PDK4Q16654 411 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 PABPC1LQ4VXU2 614 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 FBXO42Q6P3S6 717 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF549Q6P9A3 640 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 FAM220AQ7Z4H9 259 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 FUKQ8N0W3 1084 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ETNPPLQ8TBG4 499 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ACTL9Q8TC94 416 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 CD101Q93033 1021 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 C18orf25Q96B23 403 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 TBL1YQ9BQ87 522 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 TMEM106CQ9BVX2 250 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 MOV10Q9HCE1 1003 aaKnown RBP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ETAA1Q9NY74 926 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF112Q9UJU3 913 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ST3GAL5Q9UNP4 418 aa6.21□□□□□ -1.42
SCN1A-203ENST00000409050 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.21□□□□□ -1.42
SCN1A-203ENST00000409050 ZC3H13Q5T200 1668 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 GNG14A0A1W2PPG7 69 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PDE2AO00408 941 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SGPL1O95470 568 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ITGAVP06756 1048 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 THP07101 528 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 GLI1P08151 1106 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 NR4A1P22736 598 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 GSTM5P46439 218 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 NFIXQ14938 502 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 GLRA4Q5JXX5 417 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 FBXO47Q5MNV8 452 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 MILR1Q7Z6M3 343 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 NT5DC3Q86UY8 548 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TBC1D21Q8IYX1 336 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 HS6ST3Q8IZP7 471 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 BLOC1S5Q8TDH9 187 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 USP7Q93009 1102 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TIFAQ96CG3 184 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 OMA1Q96E52 524 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 MPP4Q96JB8 637 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 SEPT5Q99719 369 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 TMEM109Q9BVC6 243 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 EPB41L4AQ9HCS5 686 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 NMRK2Q9NPI5 230 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 CISHQ9NSE2 258 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 THG1LQ9NWX6 298 aaKnown RBP6.2□□□□□ -1.42
SCN1A-203ENST00000409050 PADI4Q9UM07 663 aa6.2□□□□□ -1.42
SCN1A-203ENST00000409050 ENTPD4Q9Y227 616 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms